- Scientific Name
- Oryza sativa Indica Group
- Common Names
- Indian rice, Indica rice; long-grained rice; Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica
- Bioproject
- PRJNA361
- Biosample
- SAMN02953581
- Accession No.
- GCA_000004655.2
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Beijing Institute of Genomics, Chinese Academy of Sciences
- Released Date
- 2023-10-25
- NCBI Released Date
- 2011-02-25
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 426,337,286 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 10,490 |
| GC content | 43.5 |
| Scaffold sequence No. | 10,627 |
| Scaffold L50 | 17 |
| Scaffold N50 (bp) | 7,196,410 |
| Scaffold N75 (bp) | 2,575,050 |
| Scaffold N90 (bp) | 16,807 |
| Contig sequence No. | 50,234 |
| Contig L50 | 4,918 |
| Contig N50 (bp) | 23,203 |
| Unique components No. | 50,230 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 39,607 |
| Ns gap sequence region length (bp) | 15,662,139 |
| Gaps No. between scaffolds | 137 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 37358 | 730 | 144 | 1053 | 0 | 0 | 39285 |