- Scientific Name
- Setaria italica
- Common Names
- foxtail millet; Chaetochloa italica, Panicum italicum, Pennisetum macrochaetum, Setaria viridis subsp. italica
- Bioproject
- PRJNA32913
- Biosample
- SAMN02981383
- Accession No.
- GCA_000263155.2
- RefSeq Accession No.
- GCF_000263155.2
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- JGI-PGF
- Released Date
- 2025-02-23
- NCBI Released Date
- 2015-10-30
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000263155.2 | GCF_000263155.2 | different | Setaria_italica_v2.0 | Draft genome in scaffold level | 2015-10-30 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000263155.1 | GCF_000263155.1 | identical | Setaria V1 | Draft genome in chromosome level | 2012-05-17 | DNA GFF RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 405,732,883 |
| Chromosomes, organellas and plasmids sequnece No. | 9 |
| Genome sequence No. | 336 |
| GC content | 46 |
| Scaffold sequence No. | 336 |
| Scaffold L50 | 4 |
| Scaffold N50 (bp) | 47,252,588 |
| Scaffold N75 (bp) | 40,407,879 |
| Scaffold N90 (bp) | 36,014,550 |
| Contig sequence No. | 6,778 |
| Contig L50 | 982 |
| Contig N50 (bp) | 126,273 |
| Unique components No. | 6,778 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 6,442 |
| Ns gap sequence region length (bp) | 4,823,979 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 34584 | 0 | 0 | 0 | 0 | 0 | 34584 |
Statistics of Genome Assembly
| Genome size (bp) | 405,868,399 |
| Chromosomes, organellas and plasmids sequnece No. | 10 |
| Genome sequence No. | 337 |
| GC content | 46 |
| Scaffold sequence No. | 337 |
| Scaffold L50 | 4 |
| Scaffold N50 (bp) | 47,252,588 |
| Scaffold N75 (bp) | 40,407,879 |
| Scaffold N90 (bp) | 36,014,550 |
| Contig sequence No. | 6,779 |
| Contig L50 | 983 |
| Contig N50 (bp) | 126,273 |
| Unique components No. | 6,779 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 6,442 |
| Ns gap sequence region length (bp) | 4,823,979 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 27505 | 578 | 8 | asse2032 | 2001 | 0 | 32124 |