- Scientific Name
- Oryza sativa Indica Group
- Common Names
- Indian rice, Indica rice; long-grained rice; Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica
- Bioproject
- PRJNA227300
- Biosample
- SAMN02401119
- Accession No.
- GCA_000725085.2
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Centre for Cellular and Molecular Platforms
- Released Date
- 2023-11-07
- NCBI Released Date
- 2016-04-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000725085.2 | - | - | ASM72508v2 | Draft genome in scaffold level | 2016-04-05 | DNA |
| GCA_000725085.1 | - | - | HR-12_Indica_denovo_asembly | Complete genome | 2014-07-11 | DNA GFF |
Statistics of Genome Assembly
| Genome size (bp) | 389,752,640 |
| Chromosomes, organellas and plasmids sequnece No. | 13 |
| Genome sequence No. | 15,907 |
| Scaffold sequence No. | 15,907 |
| Scaffold L50 | 7 |
| Scaffold N50 (bp) | 22,509,088 |
| Scaffold N75 (bp) | 158,141 |
| Scaffold N90 (bp) | 23,008 |
| Contig sequence No. | 18,988 |
| Contig L50 | 650 |
| Contig N50 (bp) | 159,270 |
| Unique components No. | 15,907 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 3,081 |
| Ns gap sequence region length (bp) | 174,064 |
| Gaps No. between scaffolds | 0 |