- Scientific Name
- Oryza sativa Indica Group
- Common Names
- Indian rice, Indica rice; long-grained rice; Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica
- Bioproject
- PRJNA276972
- Biosample
- SAMN03380734
- Accession No.
- GCA_001618795.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Huazhong Agricultural University
- Released Date
- 2023-10-30
- NCBI Released Date
- 2016-04-14
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001618795.1 | - | - | ZSv2.0 | Draft genome in scaffold level | 2016-04-14 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 386,485,583 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 2,300 |
| Scaffold sequence No. | 8,481 |
| Scaffold L50 | 107 |
| Scaffold N50 (bp) | 910,378 |
| Scaffold N75 (bp) | 382,623 |
| Scaffold N90 (bp) | 86,291 |
| Contig sequence No. | 24,173 |
| Contig L50 | 505 |
| Contig N50 (bp) | 188,883 |
| Unique components No. | 24,173 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 15,692 |
| Ns gap sequence region length (bp) | 35,614,695 |
| Gaps No. between scaffolds | 6,181 |