Genome Warehouse

Scientific Name: Pistacia vera
Common Names: pistachio;
Bioproject: PRJNA526975
Biosample: SAMN11269074
Accession No.: GCA_008641045.1
RefSeq Accession No.: GCF_008641045.1
RefSeq vs GenBank similarity: different
Source: NCBI
External Links: NCBI
Submitter Organization: Chinese Academy of Sciences
Released Date: 2025-02-23
NCBI Released Date: 2019-09-23
Assembly Level: Draft genome in scaffold level
Genome Representation: Full Genome
Download: DNA
RefSeq Download: RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
Publication(s)

History

Assembly Accession	RefSeq Accession	RefSeq vs GenBank similarity	Assembly Name	Assembly Level	NCBI Released Date	Download Files
GCA_008641045.1	GCF_008641045.1	different	PisVer_v2	Draft genome in chromosome level	2019-09-23	DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

GenBank
RefSeq

Statistics of Genome Assembly

Genome size (bp)	671,152,441
Chromosomes, organellas and plasmids sequnece No.	1
Genome sequence No.	1,888
GC content	36
Scaffold sequence No.	1,888
Scaffold L50	217
Scaffold N50 (bp)	949,204
Scaffold N75 (bp)	507,168
Scaffold N90 (bp)	263,530
Contig sequence No.	2,350
Contig L50	282
Contig N50 (bp)	714,252
Unique components No.	1,888
No. of regions with alternate loci or patches	0
Ns gap sequence No. (bp)	462
Ns gap sequence region length (bp)	1,059,236
Gaps No. between scaffolds	0

Statistics of Genome Assembly

Genome size (bp)	671,280,010
Chromosomes, organellas and plasmids sequnece No.	1
Genome sequence No.	1,865
GC content	36
Scaffold sequence No.	1,865
Scaffold L50	218
Scaffold N50 (bp)	948,305
Scaffold N75 (bp)	507,168
Scaffold N90 (bp)	263,530
Contig sequence No.	2,327
Contig L50	282
Contig N50 (bp)	714,252
Unique components No.	1,865
No. of regions with alternate loci or patches	0
Ns gap sequence No. (bp)	462
Ns gap sequence region length (bp)	1,059,236
Gaps No. between scaffolds	0

Annotation of Whole Genome Assembly

asse

	Protein	trna	rrna	ncrna	Pseudogene	Others	Total
Total	32030	623	31	3978	5689	0	42351