- Scientific Name
- Oryza sativa tropical japonica subgroup
- Common Names
- Oryza sativa (javanica cultivar-group), Oryza sativa tropical japonica group, Oryza sativa var. javanica, Oryza sativa tropical japonica cultivar-group
- Bioproject
- PRJNA565484
- Biosample
- SAMN12748601
- Accession No.
- GCA_009831315.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- University of Arizona
- Released Date
- 2023-11-16
- NCBI Released Date
- 2020-01-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_009831315.1 | - | - | Os132278RS1 | Draft genome in scaffold level | 2020-01-06 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 383,243,376 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 81 |
| Scaffold sequence No. | 124 |
| Scaffold L50 | 13 |
| Scaffold N50 (bp) | 11,025,322 |
| Scaffold N75 (bp) | 6,444,430 |
| Scaffold N90 (bp) | 3,641,273 |
| Contig sequence No. | 124 |
| Contig L50 | 13 |
| Contig N50 (bp) | 11,025,322 |
| Unique components No. | 124 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 4,300 |
| Gaps No. between scaffolds | 43 |