Genome Warehouse

Scientific Name: Mangifera indica
Common Names: mango;
Bioproject: PRJNA487154
Biosample: SAMN09899728
Accession No.: GCA_011075055.1
RefSeq Accession No.: GCF_011075055.1
RefSeq vs GenBank similarity: different
Source: NCBI
External Links: NCBI
Submitter Organization: Beijing Institute of Genomics, Chinese Academy of Sciences
Released Date: 2024-10-01
NCBI Released Date: 2020-03-10
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Download: DNA
RefSeq Download: RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
Publication(s)

Assembly Accession	RefSeq Accession	RefSeq vs GenBank similarity	Assembly Name	Assembly Level	NCBI Released Date	Download Files
GCA_011075055.1	GCF_011075055.1	different	CATAS_Mindica_2.1	Draft genome in scaffold level	2020-03-10	DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

Genome size (bp)	392,983,452
Chromosomes, organellas and plasmids sequnece No.	22
Genome sequence No.	252
GC content	32.5
Scaffold sequence No.	252
Scaffold L50	10
Scaffold N50 (bp)	17,652,500
Scaffold N75 (bp)	13,817,227
Scaffold N90 (bp)	12,294,262
Contig sequence No.	421
Contig L50	35
Contig N50 (bp)	3,579,047
Unique components No.	252
No. of regions with alternate loci or patches	0
Ns gap sequence No. (bp)	169
Ns gap sequence region length (bp)	82,844
Gaps No. between scaffolds	0

Genome size (bp)	391,961,648
Chromosomes, organellas and plasmids sequnece No.	20
Genome sequence No.	250
GC content	32.5
Scaffold sequence No.	250
Scaffold L50	10
Scaffold N50 (bp)	17,652,500
Scaffold N75 (bp)	13,817,227
Scaffold N90 (bp)	12,294,262
Contig sequence No.	419
Contig L50	35
Contig N50 (bp)	3,579,047
Unique components No.	250
No. of regions with alternate loci or patches	0
Ns gap sequence No. (bp)	169
Ns gap sequence region length (bp)	82,844
Gaps No. between scaffolds	0

Annotation of Whole Genome Assembly

asse

	Protein	trna	rrna	ncrna	Pseudogene	Others	Total
Total	32071	477	584	2622	2618	0	38372