logo
Advanced

  • Glycine max
  • Glycine_max_v4.0
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJNA19861
    Biosample
    SAMN00002965
    Accession No.
    GCA_000004515.5
    RefSeq Accession No.
    GCF_000004515.6
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    US DOE Joint Genome Institute (JGI-PGF)
    Released Date
    2024-10-02
    NCBI Released Date
    2021-03-10
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA GFF RNA CDS Protein
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000004515.5 GCF_000004515.6 different Glycine_max_v4.0 Draft genome in scaffold level 2021-03-10 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000004515.4 GCF_000004515.5 different Glycine_max_v2.1 Draft genome in scaffold level 2018-07-24 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000004515.3 GCF_000004515.4 different Glycine_max_v2.0 Draft genome in scaffold level 2015-11-04 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000004515.2 GCF_000004515.3 different V1.1 Draft genome in scaffold level 2012-09-07 DNA GFF
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 978,386,919
    Chromosomes, organellas and plasmids sequnece No. 20
    Genome sequence No. 282
    GC content 34.5
    Scaffold sequence No. 345
    Scaffold L50 18
    Scaffold N50 (bp) 20,441,467
    Scaffold N75 (bp) 14,752,442
    Scaffold N90 (bp) 8,335,823
    Contig sequence No. 9,197
    Contig L50 650
    Contig N50 (bp) 419,290
    Unique components No. 9,197
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 8,852
    Ns gap sequence region length (bp) 25,908,896
    Gaps No. between scaffolds 64
    Annotation of Whole Genome Assembly
    Protein trna rrna ncrna Pseudogene Others Total
    Total 52872 0 0 0 0 0 52872

    Statistics of Genome Assembly

    Genome size (bp) 978,941,695
    Chromosomes, organellas and plasmids sequnece No. 22
    Genome sequence No. 284
    GC content 34.5
    Scaffold sequence No. 347
    Scaffold L50 18
    Scaffold N50 (bp) 20,441,467
    Scaffold N75 (bp) 14,752,442
    Scaffold N90 (bp) 8,335,823
    Contig sequence No. 9,199
    Contig L50 651
    Contig N50 (bp) 418,909
    Unique components No. 9,199
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 8,852
    Ns gap sequence region length (bp) 25,908,896
    Gaps No. between scaffolds 64
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 47065 767 4595995 4760 0 59046