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  • Hordeum vulgare subsp. vulgare
  • MorexV3_pseudomolecules_assembly
    • Scientific Name
    Hordeum vulgare subsp. vulgare
    Common Names
    two-rowed barley; domesticated barley; Hordeum sativum, Hordeum vulgare var. nudum, Hordeum vulgare var. vulgare
    Bioproject
    PRJEB40589
    Biosample
    SAMEA7384724
    Accession No.
    GCA_904849725.1
    RefSeq Accession No.
    GCF_904849725.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Leibniz Institute of Plant Genetics and Crop Plant Research
    Released Date
    2023-12-15
    NCBI Released Date
    2021-04-01
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_904849725.1 GCF_904849725.1 different MorexV3_pseudomolecules_assembly Draft genome in scaffold level 2021-04-01 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 4,225,577,519
    Chromosomes, organellas and plasmids sequnece No. 7
    Genome sequence No. 290
    Scaffold sequence No. 290
    Scaffold L50 4
    Scaffold N50 (bp) 610,333,535
    Scaffold N75 (bp) 561,794,515
    Scaffold N90 (bp) 516,505,932
    Contig sequence No. 452
    Contig L50 15
    Contig N50 (bp) 69,630,691
    Unique components No. 290
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 162
    Ns gap sequence region length (bp) 1,325,794
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 4,225,713,981
    Chromosomes, organellas and plasmids sequnece No. 8
    Genome sequence No. 291
    GC content 44.5
    Scaffold sequence No. 291
    Scaffold L50 4
    Scaffold N50 (bp) 610,333,535
    Scaffold N75 (bp) 561,794,515
    Scaffold N90 (bp) 516,505,932
    Contig sequence No. 453
    Contig L50 15
    Contig N50 (bp) 69,630,691
    Unique components No. 291
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 162
    Ns gap sequence region length (bp) 1,325,794
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 31448 1947 146804583 5778 2 58438