- Scientific Name
- Brassica rapa
- Common Names
- field mustard;
- Bioproject
- PRJEB26620
- Biosample
- SAMEA4646473
- Accession No.
- GCA_900412535.3
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Genoscope
- Released Date
- 2025-02-23
- NCBI Released Date
- 2021-07-15
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_900412535.3 | - | - | brapa_z1_v2 | Draft genome in scaffold level | 2021-07-15 | DNA GFF RNA CDS Protein |
| GCA_900412535.2 | - | - | Brassica_rapa_Z1 | Draft genome in scaffold level | 2018-07-11 | DNA |
| GCA_900412535.1 | - | - | Brassica_rapa_Z1 | Draft genome in chromosome level | 2018-05-28 | DNA GFF |
Statistics of Genome Assembly
| Genome size (bp) | 443,953,949 |
| Chromosomes, organellas and plasmids sequnece No. | 10 |
| Genome sequence No. | 210 |
| GC content | 38 |
| Scaffold sequence No. | 210 |
| Scaffold L50 | 5 |
| Scaffold N50 (bp) | 39,217,719 |
| Scaffold N75 (bp) | 28,616,645 |
| Scaffold N90 (bp) | 4,034,065 |
| Contig sequence No. | 295 |
| Contig L50 | 14 |
| Contig N50 (bp) | 10,256,333 |
| Unique components No. | 210 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 85 |
| Ns gap sequence region length (bp) | 2,917,545 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 52701 | 0 | 0 | 0 | 0 | 0 | 52701 |