- Scientific Name
- Perilla frutescens var. hirtella
- Common Names
- Perilla setoyensis, Perilla frutescens var. citriodora, Perilla hirtella, Perilla citriodora
- Bioproject
- PRJNA431006
- Biosample
- SAMN08382016
- Accession No.
- GCA_004303085.2
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Institute of Chinese Materia Medica
- Released Date
- 2023-10-25
- NCBI Released Date
- 2021-11-02
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_004303085.2 | - | - | ASM430308v2 | Draft genome in chromosome level | 2021-11-02 | DNA GFF RNA CDS Protein |
| GCA_004303085.1 | - | - | ASM430308v1 | Draft genome in chromosome level | 2019-02-26 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 618,711,863 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 29,890 |
| GC content | 35.5 |
| Scaffold sequence No. | 29,890 |
| Scaffold L50 | 72 |
| Scaffold N50 (bp) | 2,413,193 |
| Scaffold N75 (bp) | 1,000,773 |
| Scaffold N90 (bp) | 256,826 |
| Contig sequence No. | 46,897 |
| Contig L50 | 2,276 |
| Contig N50 (bp) | 80,148 |
| Unique components No. | 29,890 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 17,007 |
| Ns gap sequence region length (bp) | 8,112,066 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 20959 | 0 | 0 | 0 | 0 | 0 | 20959 |