- Scientific Name
- Gossypium raimondii
- Common Names
- Peruvian cotton;
- Bioproject
- PRJNA171262
- Biosample
- SAMN02743920
- Accession No.
- GCA_000327365.2
- RefSeq Accession No.
- GCF_000327365.2
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- DOE Joint Genome Institute
- Released Date
- 2023-11-16
- NCBI Released Date
- 2012-12-20
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000327365.2 | GCF_000327365.2 | different | Graimondii2_0v2 | Draft genome in scaffold level | 2012-12-20 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000327365.1 | GCF_000327365.1 | different | Graimondii2_0 | Draft genome in scaffold level | 2012-12-20 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 761,091,353 |
| Chromosomes, organellas and plasmids sequnece No. | 13 |
| Genome sequence No. | 994 |
| GC content | 33 |
| Scaffold sequence No. | 994 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 62,175,169 |
| Scaffold N75 (bp) | 55,868,233 |
| Scaffold N90 (bp) | 45,765,648 |
| Contig sequence No. | 20,679 |
| Contig L50 | 1,811 |
| Contig N50 (bp) | 120,030 |
| Unique components No. | 20,679 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 19,685 |
| Ns gap sequence region length (bp) | 13,410,920 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 38206 | 0 | 0 | 0 | 0 | 0 | 38206 |