- Scientific Name
- Gossypium raimondii
- Common Names
- Peruvian cotton;
- Bioproject
- PRJNA788082
- Biosample
- SAMN30903775
- Accession No.
- GCA_025698545.1
- RefSeq Accession No.
- GCF_025698545.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Huazhong Agricultural University
- Released Date
- 2025-02-23
- NCBI Released Date
- 2022-10-17
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_025698545.1 | GCF_025698545.1 | different | ASM2569854v1 | Draft genome in scaffold level | 2022-10-17 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 750,205,487 |
| Chromosomes, organellas and plasmids sequnece No. | 13 |
| Genome sequence No. | 287 |
| GC content | 33 |
| Scaffold sequence No. | 287 |
| Scaffold L50 | 7 |
| Scaffold N50 (bp) | 57,716,579 |
| Scaffold N75 (bp) | 52,419,743 |
| Scaffold N90 (bp) | 49,929,625 |
| Contig sequence No. | 366 |
| Contig L50 | 16 |
| Contig N50 (bp) | 17,043,680 |
| Unique components No. | 287 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 79 |
| Ns gap sequence region length (bp) | 7,900 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 751,041,726 |
| Chromosomes, organellas and plasmids sequnece No. | 15 |
| Genome sequence No. | 289 |
| GC content | 33 |
| Scaffold sequence No. | 289 |
| Scaffold L50 | 7 |
| Scaffold N50 (bp) | 57,716,579 |
| Scaffold N75 (bp) | 52,419,743 |
| Scaffold N90 (bp) | 49,929,625 |
| Contig sequence No. | 368 |
| Contig L50 | 16 |
| Contig N50 (bp) | 17,043,680 |
| Unique components No. | 289 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 79 |
| Ns gap sequence region length (bp) | 7,900 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 34039 | 892 | 555 | asse6883 | 4461 | 0 | 46830 |