- Scientific Name
- Solanum dulcamara
- Common Names
- climbing nightshade;
- Bioproject
- PRJEB56942
- Biosample
- SAMEA7522044
- Accession No.
- GCA_947179165.2
- RefSeq Accession No.
- GCF_947179165.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- WELLCOME SANGER INSTITUTE
- Released Date
- 2025-02-23
- NCBI Released Date
- 2022-12-02
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_947179165.2 | GCF_947179165.1 | different | daSolDulc1.2 | Draft genome in scaffold level | 2022-12-02 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_947179165.1 | - | - | daSolDulc1.1 | Draft genome in scaffold level | 2022-10-28 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 946,926,110 |
| Chromosomes, organellas and plasmids sequnece No. | 14 |
| Genome sequence No. | 107 |
| GC content | 36 |
| Scaffold sequence No. | 107 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 80,040,668 |
| Scaffold N75 (bp) | 77,009,864 |
| Scaffold N90 (bp) | 67,654,137 |
| Contig sequence No. | 145 |
| Contig L50 | 8 |
| Contig N50 (bp) | 44,229,464 |
| Unique components No. | 107 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 38 |
| Ns gap sequence region length (bp) | 13,900 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 946,304,905 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 105 |
| GC content | 36 |
| Scaffold sequence No. | 105 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 80,040,668 |
| Scaffold N75 (bp) | 77,009,864 |
| Scaffold N90 (bp) | 67,654,137 |
| Contig sequence No. | 143 |
| Contig L50 | 8 |
| Contig N50 (bp) | 44,229,464 |
| Unique components No. | 105 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 38 |
| Ns gap sequence region length (bp) | 13,900 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 25374 | 574 | 2841 | asse2800 | 3792 | 0 | 35381 |