- Scientific Name
- Salmonella enterica subsp. enterica serovar Hvittingfoss
- Common Names
- -
- Bioproject
- PRJNA602163
- Biosample
- SAMN13884703
- Accession No.
- GCA_015180485.1
- RefSeq Accession No.
- GCF_015180485.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Federation University Australia
- Released Date
- 2024-01-07
- NCBI Released Date
- 2020-11-02
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_015180485.1 | GCF_015180485.1 | identical | ASM1518048v1 | Draft genome in chromosome level | 2020-11-02 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,889,856 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 83 |
| Scaffold sequence No. | 83 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 160,334 |
| Scaffold N75 (bp) | 98,810 |
| Scaffold N90 (bp) | 74,086 |
| Contig sequence No. | 85 |
| Contig L50 | 9 |
| Contig N50 (bp) | 160,334 |
| Unique components No. | 83 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 2 |
| Ns gap sequence region length (bp) | 234 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4575 | 82 | 29 | 10 | 96 | 3 | 4795 |
Statistics of Genome Assembly
| Genome size (bp) | 4,889,856 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 83 |
| GC content | 52 |
| Scaffold sequence No. | 83 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 160,334 |
| Scaffold N75 (bp) | 98,810 |
| Scaffold N90 (bp) | 74,086 |
| Contig sequence No. | 85 |
| Contig L50 | 9 |
| Contig N50 (bp) | 160,334 |
| Unique components No. | 83 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 2 |
| Ns gap sequence region length (bp) | 234 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4503 | 82 | 29 | asse10 | 190 | 3 | 4817 |