Genome Warehouse

Scientific Name: Streptococcus mutans
Common Names: -
Bioproject: PRJNA637878
Biosample: SAMN15532791
Accession No.: GCA_015669655.1
RefSeq Accession No.: GCF_015669655.1
RefSeq vs GenBank similarity: identical
Source: NCBI
External Links: NCBI
Submitter Organization: Icahn School of Medicine at Mount Sinai
Released Date: 2024-01-07
NCBI Released Date: 2020-11-23
Assembly Level: Draft genome in scaffold level
Genome Representation: Full Genome
Download: DNA
RefSeq Download: RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
Publication(s)

History

Assembly Accession	RefSeq Accession	RefSeq vs GenBank similarity	Assembly Name	Assembly Level	NCBI Released Date	Download Files
GCA_015669655.1	GCF_015669655.1	identical	ASM1566965v1	Draft genome in chromosome level	2020-11-23	DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

GenBank
RefSeq

Statistics of Genome Assembly

Genome size (bp)	1,987,784
Chromosomes, organellas and plasmids sequnece No.	0
Genome sequence No.	29
Scaffold sequence No.	29
Scaffold L50	5
Scaffold N50 (bp)	111,784
Scaffold N75 (bp)	87,800
Scaffold N90 (bp)	54,472
Contig sequence No.	33
Contig L50	6
Contig N50 (bp)	110,695
Unique components No.	29
No. of regions with alternate loci or patches	0
Ns gap sequence No. (bp)	4
Ns gap sequence region length (bp)	399
Gaps No. between scaffolds	0

Statistics of Genome Assembly

Genome size (bp)	1,987,784
Chromosomes, organellas and plasmids sequnece No.	0
Genome sequence No.	29
GC content	36.5
Scaffold sequence No.	29
Scaffold L50	5
Scaffold N50 (bp)	111,784
Scaffold N75 (bp)	87,800
Scaffold N90 (bp)	54,472
Contig sequence No.	33
Contig L50	6
Contig N50 (bp)	110,695
Unique components No.	29
No. of regions with alternate loci or patches	0
Ns gap sequence No. (bp)	4
Ns gap sequence region length (bp)	399
Gaps No. between scaffolds	0

Annotation of Whole Genome Assembly

asse

	Protein	trna	rrna	ncrna	Pseudogene	Others	Total
Total	1796	42	4	1	89	3	1935