- Scientific Name
- Streptococcus mutans
- Common Names
- -
- Bioproject
- PRJNA637878
- Biosample
- SAMN15532872
- Accession No.
- GCA_015670285.1
- RefSeq Accession No.
- GCF_015670285.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Icahn School of Medicine at Mount Sinai
- Released Date
- 2024-01-07
- NCBI Released Date
- 2020-11-23
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_015670285.1 | GCF_015670285.1 | identical | ASM1567028v1 | Draft genome in chromosome level | 2020-11-23 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,995,468 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 19 |
| Scaffold sequence No. | 19 |
| Scaffold L50 | 3 |
| Scaffold N50 (bp) | 329,795 |
| Scaffold N75 (bp) | 159,804 |
| Scaffold N90 (bp) | 159,571 |
| Contig sequence No. | 25 |
| Contig L50 | 5 |
| Contig N50 (bp) | 159,571 |
| Unique components No. | 19 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 6 |
| Ns gap sequence region length (bp) | 594 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 1,995,468 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 19 |
| GC content | 36.5 |
| Scaffold sequence No. | 19 |
| Scaffold L50 | 3 |
| Scaffold N50 (bp) | 329,795 |
| Scaffold N75 (bp) | 159,804 |
| Scaffold N90 (bp) | 159,571 |
| Contig sequence No. | 25 |
| Contig L50 | 5 |
| Contig N50 (bp) | 159,571 |
| Unique components No. | 19 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 6 |
| Ns gap sequence region length (bp) | 594 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 1803 | 35 | 6 | asse1 | 88 | 3 | 1936 |