- Scientific Name
- Sphingomonadales bacterium
- Common Names
- -
- Bioproject
- PRJNA629336
- Biosample
- SAMN18061489
- Accession No.
- GCA_017304105.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Jill Banfield Lab (University of California Berkeley)
- Released Date
- 2023-12-29
- NCBI Released Date
- 2021-03-08
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 3,875,922 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 452 |
| GC content | 66 |
| Scaffold sequence No. | 452 |
| Scaffold L50 | 106 |
| Scaffold N50 (bp) | 11,611 |
| Scaffold N75 (bp) | 7,509 |
| Scaffold N90 (bp) | 4,193 |
| Contig sequence No. | 499 |
| Contig L50 | 112 |
| Contig N50 (bp) | 10,902 |
| Unique components No. | 452 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 47 |
| Ns gap sequence region length (bp) | 2,221 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3702 | 37 | 0 | 0 | 152 | 2 | 3893 |