HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC01000086

Dataset Information

Omics:
Single cell RNA-seq
Omics Detail:
10x Genomics
Species:
Zebrafish
Organ:
KM (kidney marrow)
Cell Number:
21060
Gene Number:
30316
Genome Reference:
GRCz11
Data Normalization:
SCT
Sequencing Platform:
Integrated data
Cell Sorting Strategies:
Integrated data

Publication

Single-cell RNA sequencing unveils the hidden powers of zebrafish kidney for generating both hematopoiesis and adaptive antiviral immunity.

Hu C, Zhang N, Hong Y, Tie R, Fan D, Lin A, Chen Y, Xiang LX, Shao JZ.
Volume:13 Issue: eLife | 2024-03-18 | [38497789]

Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single-cell resolution using RNA sequencing.

Tang Q, Iyer S, Lobbardi R, Moore JC, Chen H, Lareau C, Hebert C, Shaw ML, Neftel C, Suva ML, Ceol CJ, Bernards A, Aryee M, Pinello L, Drummond IA, Langenau DM.
Volume:214 Issue:10 The Journal of experimental medicine | 2017-09-06 | [28878000]

Visualization

Annotation

Gene Expression (Feature plot)

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Gene Expression (Violin plot)

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Gene Expression (Dot plot)

Differentially Expressed Genes

Species Dataset Gene P.value logFC adj.P.val Stage Cell type Cluster

GO Enrichment

Cell Interaction

Species Stage Dataset Source Target Communication probability P value Ligand Receptor Interact Name