HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC01000094

Dataset Information

Omics:
Single cell RNA-seq
Omics Detail:
10x Genomics
Species:
Human
Organ:
Bone marrow
Cell Number:
117349
Gene Number:
31048
Genome Reference:
GRCh38
Data Normalization:
SCT
Sequencing Platform:
Integrated data
Cell Sorting Strategies:
Integrated data

Publication

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis.

Ranzoni AM, Tangherloni A, Berest I, Riva SG, Myers B, Strzelecka PM, Xu J, Panada E, Mohorianu I, Zaugg JB, Cvejic A.
Volume:28 Issue:3 Cell stem cell | 2020-12-21 | [33352111]

Mapping the cellular biogeography of human bone marrow niches using single-cell transcriptomics and proteomic imaging.

Bandyopadhyay S, Duffy MP, Ahn KJ, Sussman JH, Pang M, Smith D, Duncan G, Zhang I, Huang J, Lin Y, Xiong B, Imtiaz T, Chen CH, Thadi A, Chen C, Xu J, Reichart M, Martinez Z, Diorio C, Chen C, Pillai V, Snaith O, Oldridge D, Bhattacharyya S, Maillard I, Carroll M, Nelson C, Qin L, Tan K.
Volume:187 Issue:12 Cell | 2024-05-06 | [38714197]

Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia.

Granja JM, Klemm S, McGinnis LM, Kathiria AS, Mezger A, Corces MR, Parks B, Gars E, Liedtke M, Zheng GXY, Chang HY, Majeti R, Greenleaf WJ.
Volume:37 Issue:12 Nature biotechnology | 2019-12-02 | [31792411]

Visualization

Annotation

Gene Expression (Feature plot)

Please select gene!

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

Species Dataset Gene P.value logFC adj.P.val Stage Cell type Cluster

GO Enrichment

Cell Interaction

Species Stage Dataset Source Target Communication probability P value Ligand Receptor Interact Name