Dataset - HemAtlas

HemAtlas

HemSC01000094

Dataset Information

Omics:

Single cell RNA-seq

Omics Detail:

10x Genomics

Species:

Human

Organ:

Bone marrow

Cell Number:

117349

Gene Number:

31048

Genome Reference:

GRCh38

Data Normalization:

SCT

Sequencing Platform:

Integrated data

Cell Sorting Strategies:

Integrated data

Publication

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis.

Ranzoni AM, Tangherloni A, Berest I, Riva SG, Myers B, Strzelecka PM, Xu J, Panada E, Mohorianu I, Zaugg JB, Cvejic A.
Volume:28 Issue:3 Cell stem cell | 2020-12-21 | [33352111]

Mapping the cellular biogeography of human bone marrow niches using single-cell transcriptomics and proteomic imaging.

Bandyopadhyay S, Duffy MP, Ahn KJ, Sussman JH, Pang M, Smith D, Duncan G, Zhang I, Huang J, Lin Y, Xiong B, Imtiaz T, Chen CH, Thadi A, Chen C, Xu J, Reichart M, Martinez Z, Diorio C, Chen C, Pillai V, Snaith O, Oldridge D, Bhattacharyya S, Maillard I, Carroll M, Nelson C, Qin L, Tan K.
Volume:187 Issue:12 Cell | 2024-05-06 | [38714197]

Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia.

Granja JM, Klemm S, McGinnis LM, Kathiria AS, Mezger A, Corces MR, Parks B, Gars E, Liedtke M, Zheng GXY, Chang HY, Majeti R, Greenleaf WJ.
Volume:37 Issue:12 Nature biotechnology | 2019-12-02 | [31792411]

Visualization

Select Gene(s):

Please select gene!

Select Gene(s):

Species	Dataset	Gene	P.value	logFC	adj.P.val	Stage	Cell type	Cluster

Species	Stage	Dataset	Source	Target	Communication probability	P value	Ligand	Receptor	Interact Name

HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC01000094

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas Mapping developmental hematopoiesis across stages, species and models

HemSC01000094

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas
Mapping developmental hematopoiesis across stages, species and models