|
|
| GenBank ID | NM_001048811 |
| Alias | OsDOS |
| Organism | Rice (Oryza sativa) |
| Taxonomic identifier | [NCBI] |
| Function category | Transcription regulation:CCCH-type zinc finge |
| Effect for Senescence | delay |
| Gene Description | The expression of OsDOS was down-regulated during natural leaf senescence, panicle development, and pollination. RNAi knockdown of OsDOS caused an accelerated age-dependent leaf senescence, whereas its overexpression produced a marked delay of leaf senescence. |
| Evidence | Genetic evidence:Transgene and mutant [Ref 1] |
| References | 1: Kong Z, Li M, Yang W, Xu W, Xue YA novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice.Plant Physiol. 2006 Aug;141(4):1376-88 |
| Gene Ontology | |
| Sequence | NM_001048811.1 | mRNA | CDS | Protein
|
|
| Mutated 1 | | Mutant name |
OsDOS_RNAi | | Mutant/Transgenic |
transgenic | | Ecotype |
Rice (Oryza sativa) |
| Mutagenesis type |
RNAi |
|
| Mutated 2 | | Mutant name |
OsDOSOE | | Mutant/Transgenic |
transgenic | | Ecotype |
Rice (Oryza sativa) |
| Mutagenesis type |
transgene |
|
miRNA Interaction  | |
|
| Details | | target: NM_001048811
miRNA: osa-miR2097-3p
miRNA: osa-miR2097-3p
mfe: -29.1 kcal/mol
p-value: 0.020571
position: 1314
target 5' A A G G 3'
GGAUG UGGCAUGGAG AGGAGAA
UUUAC GCUGUGCUUC UUCUCUU
miRNA 3' 5'
target: NM_001048811
miRNA: osa-miR2102-5p
miRNA: osa-miR2102-5p
mfe: -38.8 kcal/mol
p-value: 0.004243
position: 1672
target 5' C C C C A 3'
GU GCGGCGGCGG C UGCCU
CA CGCCGCCGCC G ACGGG
miRNA 3' C A 5'
target: NM_001048811
miRNA: osa-miR2871a
miRNA: osa-miR2871a
mfe: -20.5 kcal/mol
p-value: 0.188339
position: 196
target 5' G G A 3'
GUGGC GUGGGGAU GAGAUG
CACUG UAUCUUUG UUUUAU
miRNA 3' G A 5'
target: NM_001048811
miRNA: osa-miR2871b
miRNA: osa-miR2871b
mfe: -20.5 kcal/mol
p-value: 0.174078
position: 196
target 5' G G A 3'
GUGGC GUGGGGAU GAGAUG
CACUG UAUCUUUG UUUUAU
miRNA 3' G A 5'
target: NM_001048811
miRNA: osa-miR530-5p
miRNA: osa-miR530-5p
mfe: -31.9 kcal/mol
p-value: 0.003812
position: 490
target 5' A C G 3'
AGG GCGGGUGCAAG GCG
UCC CGUCCACGUUU CGU
miRNA 3' A A A 5'
|
|
| Ortholog Group | |
|
| Ortholog Groups: OG5_138490 | |
| Cross Link | |
|
|
