Genome Sequences
Language / 语言
| Virus Strain Name | SARS-CoV-2/human/KOR/KCDC03/2020 |
| Accession ID | MT020782.1 |
| Host | Homo sapiens |
| Data Source | GenBank |
| Sample Collection Date | 2020-01-25 |
| Location | South Korea / Gyeonggi-do |
| Related ID | EPI_ISL_407193 |
| Lineage | A (Version: 2022-01-05) |
| Nuc.Completeness | Complete |
| Quality Assessment | 0/0/0/4/NO |
| Originating Lab | Korea Centers for Disease Control & Prevention (KCDC) Center for Laboratory Control of Infectious Diseases Division of Viral Diseases |
| Submitting Lab | Korea Centers for Disease Control & Prevention (KCDC) Center for Laboratory Control of Infectious Diseases Division of Viral Diseases |
| Create Date | 2020-02-05 03:35:50 |
| Age | NA |
| Gender | NA |
| Occupation | NA |
| Onset Date | NA |
| Admission date | NA |
| Travel history/ Contact history | NA |
| Severity of illness | NA |
| Patient Status | The patient had self-administered antipyretics for initial symptoms such as chills and fever. The patient had experienced intermittent coughing with sputum 3 days after the administration of antipyretics |
| Clinical symptoms and latent days | Chills, fever, intermittent coughing with sputum |
| Clinical tests | Nasopharyngeal and oropharyngeal swab and sputum samples were collected from symptomatic patients to detect SARS-CoV-2 by real-time reverse transcriptase (RT)-PCR |
| Chronic Medical Illness | NA |
| Co-infection with other respiratory pathogens | NA |
| Comorbid conditions | NA |
| Clinical medication and treatment | Self-administered antipyretics |
| Physiological and biochemical indicators | NA |
| Discharge date | NA |
| Related publication | Identification of Coronavirus Isolated from a Patient in Korea with COVID-19. [PMID: 32149036] |
| Reference | 2019-nCoV (MN908947.3) |
| Virus Strain Name | hCoV-19/South Korea/KCDC03/2020 (MT020782.1) |
| SNP No. | 4 |
| Insertion No. | 0 |
| Deletion No. | 2 |
| Indel No. | 0 |
| Similarity | 99.98 |
| Quality Assessment Grade | A |
| Annotation Statistics | 6(synonymous_variant:2; intergenic_variant:2; missense_variant:2) |
| File Download (GFF3) |
| Variant ID | Ref | Alt | Gene Codons | Protein Amino Acid Change |
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