在线工具 - 2019新型冠状病毒信息库

Fastq-to-Variants

4个结果文件打包下载 (stat.tsv, var.vcf, ann.tsv, coverage_plot.data)

Statistics type	Number
Aligned_bases	115931610
Aligned_reads_number	642377
Coverage%	100
Duplication_rate%	0
Indel_rate%	0.0072
Mean_read_length	183.8
Mismatch_rate%	0.1
Sequencing_depth	3816.13
Variants_number	6

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Reference	Start position	End position	Base	Ref base	Ref annotation position	Annotation type	Protein.position.amino acids change	Gene.position.codons	Impact

Reference	Start position	End position	Base	Ref base	Ref annotation position	Annotation type	Protein.position.amino acids change	Gene.position.codons	Impact
2019-nCoV	8782	8782	T	REF:C	START:gene-orf1ab	synonymous_variant	QHD43415.1:p.2839S	gene-orf1ab:c.8517agC>agT	LOW
2019-nCoV	17747	17747	T	REF:C	START:gene-orf1ab	missense_variant	QHD43415.1:p.5828P>L	gene-orf1ab:c.17483cCt>cTt	MODERATE
2019-nCoV	17858	17858	G	REF:A	START:gene-orf1ab	missense_variant	QHD43415.1:p.5865Y>C	gene-orf1ab:c.17594tAt>tGt	MODERATE
2019-nCoV	18060	18060	T	REF:C	START:gene-orf1ab	synonymous_variant	QHD43415.1:p.5932L	gene-orf1ab:c.17796ctC>ctT	LOW
2019-nCoV	20281	20281	C	REF:T	START:gene-orf1ab	missense_variant	QHD43415.1:p.6673F>L	gene-orf1ab:c.20017Ttc>Ctc	MODERATE

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