BackgroundBoth male and female tsetse flies, haematophagous insects, transmit trypanosomes between hosts and are the cyclical vectors for Human African Trypanosomiasis (HAT) and Animal African Trypanosomiasis (AAT). Trypanosomes responsible for AAT can be transmitted by tsetse between wild animals and livestock. However, the degree of connectivity between the sylvatic and domestic cycles is unknown. The objectives of this study were to investigate patterns of host feeding in relationship to trypanosome prevalence among Kenyan populations of G. pallidipes at the livestock-wildlife interface.\n\nMethodology/Principal FindingsSources of blood meals of Glossina pallidipes were identified by polymerase chain reaction amplification and sequencing of the mitochondrial cytochrome b gene and compared with previous characterization of trypanosome prevalence from the same flies. In the Nguruman region in southern Kenya, the majority (98%) of the 148 flies for which dominant hosts could be resolved fed on single host species and only a single fly had fed on a domestic host; intriguingly this was the only fly confirmed to have fed on cattle. In contrast, in the Shimba Hills region (South Coast), multiple host feeding was more common: 42% inside a fenced wildlife protected area, where 35% of dominant hosts were domestic animals or humans, compared with 62% from traps set along the border to an adjacent village, which was dominated by domestic hosts (77%). Across sites, 44% of flies tested positive for trypanosomes (28/50 domestic hosts; 78/193 wild hosts). Multiple Correspondence Analysis revealed strong correlations between feeding pattern, host type and site but these were resolved along a different dimension than trypanosome status.\n\nConclusions/SignificanceOur results suggest that host fidelity when feeding on wild hosts in G. pallidipes could reduce risk of transmission of trypanosomes to domestic hosts in interface areas and emphasise the importance of considering vector behaviour when designing management interventions.\n\nAuthor SummaryTsetse flies are the main vectors transmitting trypanosomes, which cause disease in both humans and animals. Since tsetse flies feed on a wide range of vertebrate hosts, there is the potential for transmission between wild and domestic animals in regions where their ranges overlap. In this study, we used molecular methods to determine the hosts fed on by tsetse flies sampled from three sites in Kenya at the wildlife-livestock interface. In areas where wildlife dominated, tsetse tended to feed on single host species, whereas in areas with more domesticated animals, they tended to feed on multiple hosts. These results suggest either that tsetse flies get interrupted more while feeding on domestic hosts or that they prefer to feed on wildlife and so switch hosts more often when feeding on less desirable hosts. Using data from a previous study on the same samples, we found that trypanosome prevalence was not correlated with the type or number of hosts fed on. These results have important implications for understanding the risk of transmission between wildlife and livestock in regions bordering protected areas but the high host fidelity for wild hosts suggests that tsetse feeding preferences could reduce risks of disease transmission to livestock.