Genome-wide association studies in type 2 diabetes.

Mark I McCarthy, Eleftheria Zeggini
Author Information
  1. Mark I McCarthy: Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Headington, Oxford, OX3 7LJ, UK. mark.mccarthy@drl.ox.ac.uk

Abstract

Despite numerous candidate gene and linkage studies, the field of type 2 diabetes (T2D) genetics had until recently succeeded in identifying few genuine disease-susceptibility loci. The advent of genome-wide association (GWA) scans has transformed the situation, leading to an expansion in the number of established, robustly replicating T2D loci to almost 20. These novel findings offer unique insights into the pathogenesis of T2D and in the main point toward the etiologic importance of disorders of beta-cell development and function. All associated variants have common allele frequencies in the discovery populations, and exert modest to small effects on the risk of disease, characteristics that limit their prognostic and diagnostic potential. However, ongoing studies focusing on the role of copy number variation and targeting low-frequency polymorphisms should identify additional T2D susceptibility loci, some of which may have larger effect sizes and offer better individual prediction of disease risk.

References

  1. Diabetes. 2007 Aug;56(8):2178-82 [PMID: 17519421]
  2. Nat Genet. 2006 Mar;38(3):320-3 [PMID: 16415884]
  3. Diabetes. 2007 Dec;56(12):3105-11 [PMID: 17827400]
  4. Nat Genet. 2008 Sep;40(9):1107-12 [PMID: 19165925]
  5. Nat Rev Genet. 2008 May;9(5):356-69 [PMID: 18398418]
  6. Nature. 2007 Feb 22;445(7130):881-5 [PMID: 17293876]
  7. Nat Genet. 2009 Jan;41(1):82-8 [PMID: 19060908]
  8. Nat Genet. 2000 Sep;26(1):76-80 [PMID: 10973253]
  9. Nat Genet. 2007 Jul;39(7):906-13 [PMID: 17572673]
  10. Nat Genet. 2007 Aug;39(8):951-3 [PMID: 17603484]
  11. N Engl J Med. 2004 Apr 29;350(18):1838-49 [PMID: 15115830]
  12. Nat Genet. 2008 Oct;40(10):1166-74 [PMID: 18776908]
  13. Diabetes. 2007 Mar;56(3):685-93 [PMID: 17327436]
  14. Nat Genet. 2008 Sep;40(9):1092-7 [PMID: 18711367]
  15. Nature. 2007 Aug 16;448(7155):767-74 [PMID: 17700693]
  16. Nat Rev Genet. 2007 Sep;8(9):657-62 [PMID: 17703236]
  17. Science. 2007 May 11;316(5826):889-94 [PMID: 17434869]
  18. Diabetes. 2008 Nov;57(11):3129-35 [PMID: 18591388]
  19. Diabetes. 2008 Oct;57(10):2563-4 [PMID: 18820211]
  20. Nat Genet. 2008 Sep;40(9):1098-102 [PMID: 18711366]
  21. Science. 2007 Jun 1;316(5829):1341-5 [PMID: 17463248]
  22. Nat Genet. 2008 May;40(5):638-45 [PMID: 18372903]
  23. Nat Genet. 2008 Mar;40(3):310-5 [PMID: 18264096]
  24. Diabetes. 2008 Feb;57(2):514-7 [PMID: 18039816]
  25. Diabetes. 2008 May;57(5):1419-26 [PMID: 18346983]
  26. Nat Genet. 2009 Jan;41(1):77-81 [PMID: 19060907]
  27. Curr Diab Rep. 2003 Apr;3(2):159-67 [PMID: 12728642]
  28. Nat Genet. 2003 Feb;33(2):177-82 [PMID: 12524541]
  29. Nat Genet. 2008 Aug;40(8):955-62 [PMID: 18587394]
  30. Nature. 2005 Oct 27;437(7063):1299-320 [PMID: 16255080]
  31. Nat Genet. 2007 Aug;39(8):977-83 [PMID: 17603485]
  32. Nat Rev Genet. 2006 Aug;7(8):632-44 [PMID: 16847463]
  33. Hum Hered. 2008;66(1):35-49 [PMID: 18223311]
  34. J Clin Invest. 2007 Aug;117(8):2155-63 [PMID: 17671651]
  35. Cancer Epidemiol Biomarkers Prev. 2006 Nov;15(11):2056-62 [PMID: 17119028]
  36. Diabetes. 2008 Jun;57(6):1730-7 [PMID: 18305142]
  37. Nat Genet. 2009 Jan;41(1):89-94 [PMID: 19060909]
  38. Science. 2007 Jun 1;316(5829):1331-6 [PMID: 17463246]
  39. Nat Genet. 2008 Sep;40(9):1039-40 [PMID: 19165915]
  40. Am J Hum Genet. 2007 Aug;81(2):338-45 [PMID: 17668382]
  41. Diabetes. 2007 Dec;56(12):3101-4 [PMID: 17804762]
  42. J Pediatr Endocrinol Metab. 2001 Sep-Oct;14(8):1085-91 [PMID: 11592564]
  43. Nat Genet. 2005 Dec;37(12):1320-2 [PMID: 16258542]
  44. Diabetes. 2003 Feb;52(2):568-72 [PMID: 12540637]
  45. Nature. 2007 Jun 7;447(7145):661-78 [PMID: 17554300]
  46. PLoS Genet. 2008 Feb 29;4(2):e1000008 [PMID: 18454194]
  47. Nature. 2006 Sep 28;443(7110):453-7 [PMID: 16957737]
  48. N Engl J Med. 2006 Aug 3;355(5):467-77 [PMID: 16885550]
  49. J Cell Sci. 2006 Oct 15;119(Pt 20):4199-206 [PMID: 16984975]
  50. PLoS One. 2007 Sep 05;2(9):e832 [PMID: 17786204]
  51. Nat Genet. 2007 Jun;39(6):770-5 [PMID: 17460697]
  52. Science. 2007 Jun 1;316(5829):1336-41 [PMID: 17463249]

Grants

  1. 079557/Wellcome Trust
  2. 088885/Wellcome Trust

MeSH Term

Diabetes Mellitus, Type 2
Genetic Predisposition to Disease
Genome-Wide Association Study
Humans
Meta-Analysis as Topic

Word Cloud

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