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Genomics, proteomics & bioinformatics
Feb, 2015;13 (1): 55-63.

Biological databases for human research.

Dong Zou, Lina Ma, Jun Yu, Zhang Zhang
Author Information
  1. Dong Zou: CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
  2. Lina Ma: CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
  3. Jun Yu: CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China. Electronic address: junyu@big.ac.cn.
  4. Zhang Zhang: CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China. Electronic address: zhangzhang@big.ac.cn.
PMID: 25712261 DOI: 10.1016/j.gpb.2015.01.006

Abstract

The completion of the Human Genome Project lays a foundation for systematically studying the human genome from evolutionary history to precision medicine against diseases. With the explosive growth of biological data, there is an increasing number of biological databases that have been developed in aid of human-related research. Here we present a collection of human-related biological databases and provide a mini-review by classifying them into different categories according to their data types. As human-related databases continue to grow not only in count but also in volume, challenges are ahead in big data storage, processing, exchange and curation.

Keywords

Big data Curation Database Database category Human

References

Nucleic Acids Res. 2015 Jan;43(Database issue):D1042-8 [PMID: 25378340]
Nucleic Acids Res. 2015 Jan;43(Database issue):D578-82 [PMID: 25274736]
Nucleic Acids Res. 2015 Jan;43(Database issue):D805-11 [PMID: 25355519]
Nucleic Acids Res. 2011 Jan;39(Database issue):D214-9 [PMID: 21051339]
Curr Protoc Bioinformatics. 2012 Sep;Chapter 1:Unit1.13 [PMID: 22948725]
Nucleic Acids Res. 2009 Jan;37(Database issue):D674-9 [PMID: 18832364]
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D611-3 [PMID: 15608272]
Nature. 2009 Apr 9;458(7239):719-24 [PMID: 19360079]
Nucleic Acids Res. 2014 Jan;42(Database issue):D92-7 [PMID: 24297251]
BMC Bioinformatics. 2008;9:271 [PMID: 18541026]
Nucleic Acids Res. 2013 Jan;41(Database issue):D445-51 [PMID: 23172288]
Nucleic Acids Res. 2012 Jan;40(Database issue):D761-9 [PMID: 22102589]
Hum Mutat. 2006 Dec;27(12):1200-8 [PMID: 17004234]
Nucleic Acids Res. 2014 Jan;42(Database issue):D86-91 [PMID: 24163105]
Mol Cell Proteomics. 2010 Apr;9(4):623-34 [PMID: 19995808]
Nucleic Acids Res. 2014 Jan;42(Database issue):D926-32 [PMID: 24304889]
Database (Oxford). 2013;2013:bat052 [PMID: 23846596]
Bioinformatics. 2010 Nov 15;26(22):2924-6 [PMID: 20861032]
Nucleic Acids Res. 2014 Jan;42(Database issue):D472-7 [PMID: 24243840]
Nature. 2012 Nov 1;491(7422):56-65 [PMID: 23128226]
Nucleic Acids Res. 2011 Jan;39(Database issue):D1002-4 [PMID: 21071405]
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W423-6 [PMID: 18477636]
Nucleic Acids Res. 2012 Jan;40(Database issue):D1047-54 [PMID: 22139925]
Nucleic Acids Res. 2015 Jan;43(Database issue):D1145-51 [PMID: 25404128]
Nucleic Acids Res. 2014 Jan;42(Database issue):D336-46 [PMID: 24271400]
Nucleic Acids Res. 2015 Jan;43(Database issue):D213-21 [PMID: 25428371]
Nucleic Acids Res. 2010 Jan;38(Database issue):D86-90 [PMID: 19969536]
Nucleic Acids Res. 2007 Jan;35(Database issue):D183-7 [PMID: 17099227]
Nucleic Acids Res. 2015 Jan;43(Database issue):D193-6 [PMID: 25399422]
Nucleic Acids Res. 2014 Jan;42(Database issue):D32-7 [PMID: 24217914]
Nucleic Acids Res. 2011 Jan;39(Database issue):D913-9 [PMID: 21062830]
Nature. 2001 Apr 12;410(6830):740 [PMID: 11298409]
Nature. 2010 Apr 15;464(7291):993-8 [PMID: 20393554]
Nucleic Acids Res. 2014 Jan;42(Database issue):D789-93 [PMID: 24194605]
Cell. 2005 Jan 14;120(1):15-20 [PMID: 15652477]
Nucleic Acids Res. 2014 Jan;42(Database issue):D1222-8 [PMID: 24136999]
Nucleic Acids Res. 2003 Jan 1;31(1):345-7 [PMID: 12520019]
Nucleic Acids Res. 2015 Jan;43(Database issue):D187-92 [PMID: 25399417]
Nucleic Acids Res. 2009 Jan;37(Database issue):D122-6 [PMID: 18829717]
Nucleic Acids Res. 2012 Jan;40(Database issue):D1202-10 [PMID: 22140109]
Nucleic Acids Res. 2014 Jan;42(Database issue):D574-80 [PMID: 24243843]
Nucleic Acids Res. 2013 Jan;41(Database issue):D239-45 [PMID: 23193281]
Nucleic Acids Res. 2013 Jan;41(Database issue):D177-87 [PMID: 23161675]
RNA Biol. 2013 Jun;10(6):925-33 [PMID: 23696037]
Nucleic Acids Res. 2014 Jan;42(Database issue):D18-25 [PMID: 24271396]
Nucleic Acids Res. 2013 Jan;41(Database issue):D118-24 [PMID: 23118488]
Nucleic Acids Res. 2014 Jan;42(Database issue):D285-91 [PMID: 24288376]
Nucleic Acids Res. 2011 Jan;39(Database issue):D1005-10 [PMID: 21097893]
Nucleic Acids Res. 2014 Jan;42(Database issue):D1001-6 [PMID: 24316577]
Nucleic Acids Res. 2001 Jan 1;29(1):308-11 [PMID: 11125122]
Nucleic Acids Res. 2014 Jan;42(Database issue):D68-73 [PMID: 24275495]
Nucleic Acids Res. 2011 Jan;39(Database issue):D685-90 [PMID: 21071392]
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D572-80 [PMID: 16381935]
Eur J Hum Genet. 2014 Jul;22(7):949-52 [PMID: 24301061]
Hum Mutat. 2000;15(1):86-94 [PMID: 10612827]
Database (Oxford). 2013;2013:bat018 [PMID: 23584832]
Database (Oxford). 2011;2011:baq036 [PMID: 21245076]
Nucleic Acids Res. 2014 Jan;42(Database issue):D78-85 [PMID: 24304892]
Nucleic Acids Res. 2014 Jan;42(Database issue):D749-55 [PMID: 24316576]
Nucleic Acids Res. 2013 Jan;41(Database issue):D801-7 [PMID: 23161693]
Nucleic Acids Res. 2015 Jan;43(Database issue):D168-73 [PMID: 25332394]
Nucleic Acids Res. 2008 Jan;36(Database issue):D878-83 [PMID: 18033805]
Nucleic Acids Res. 2007 Jan;35(Database issue):D823-8 [PMID: 17178747]
Bioinformatics. 2008 Oct 1;24(19):2127-8 [PMID: 18819940]
Nucleic Acids Res. 2012 Jan;40(Database issue):D1255-61 [PMID: 22075991]
Nucleic Acids Res. 2014 Jan;42(Database issue):D1063-9 [PMID: 24137000]
Genome Biol. 2009;10(11):R130 [PMID: 19919682]
Nucleic Acids Res. 2013 Jan;41(Database issue):D226-32 [PMID: 23125362]
Neoplasia. 2004 Jan-Feb;6(1):1-6 [PMID: 15068665]
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51 [PMID: 16381856]
Nucleic Acids Res. 2013 Jan;41(Database issue):D793-800 [PMID: 23143270]
Nucleic Acids Res. 2015 Jan;43(Database issue):D123-9 [PMID: 25352543]
Nucleic Acids Res. 2014 Jan;42(Database issue):D109-13 [PMID: 24163250]
Nucleic Acids Res. 2009 Jan;37(Database issue):D767-72 [PMID: 18988627]
Nucleic Acids Res. 2015 Jan;43(Database issue):D153-9 [PMID: 25416803]
Nucleic Acids Res. 2014 Jan;42(Database issue):D142-7 [PMID: 24194598]
Bioinformatics. 2010 Jul 15;26(14):1772-6 [PMID: 20547637]
Nucleic Acids Res. 2013 Jan;41(Database issue):D983-6 [PMID: 23175614]
Nucleic Acids Res. 2010 Jan;38(Database issue):D161-6 [PMID: 19858104]
Nucleic Acids Res. 2002 Jan 1;30(1):303-5 [PMID: 11752321]
Nucleic Acids Res. 2014 Jan;42(Database issue):D104-8 [PMID: 24217916]
Database (Oxford). 2014;2014:bau025 [PMID: 24705204]
Database (Oxford). 2011;2011:bar055 [PMID: 22134927]
Nucleic Acids Res. 2009 Jan;37(Database issue):D98-104 [PMID: 18927107]
Genomics Proteomics Bioinformatics. 2014 Aug;12(4):153-5 [PMID: 25042682]
Nucleic Acids Res. 2015 Jan;43(Database issue):D376-81 [PMID: 25348408]
Nucleic Acids Res. 2010 Jan;38(Database issue):D532-9 [PMID: 19897547]
Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71 [PMID: 24225315]
Mol Neurobiol. 2016 Jan;53(1):310-9 [PMID: 25432889]
Nucleic Acids Res. 2007 Jan;35(Database issue):D247-52 [PMID: 17130144]
Nucleic Acids Res. 2008 Jan;36(Database issue):D173-7 [PMID: 17881367]
Nucleic Acids Res. 2011 Jan;39(Database issue):D28-31 [PMID: 20972220]
OMICS. 2012 Jun;16(6):357-62 [PMID: 22702248]
Nucleic Acids Res. 2013 Jan;41(Database issue):D246-51 [PMID: 23042674]
Nucleic Acids Res. 2014 Jan;42(Database issue):D568-73 [PMID: 24136997]
Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63 [PMID: 24259432]
Hum Mutat. 2011 May;32(5):557-63 [PMID: 21520333]
J Intern Med. 2011 Nov;270(5):428-46 [PMID: 21752111]
Nucleic Acids Res. 2011 Jan;39(Database issue):D301-8 [PMID: 21036867]
Nat Genet. 2013 Oct;45(10):1113-20 [PMID: 24071849]
Nucleic Acids Res. 2008 Jan;36(Database issue):D836-41 [PMID: 17890243]
Nucleic Acids Res. 2012 Jan;40(Database issue):D109-14 [PMID: 22080510]
Nucleic Acids Res. 2003 Jan 1;31(1):142-6 [PMID: 12519968]
Nucleic Acids Res. 2002 Jan 1;30(1):145-8 [PMID: 11752277]
Nucleic Acids Res. 2014 Jan;42(Database issue):D114-22 [PMID: 24185695]
Nucleic Acids Res. 2015 Jan;43(Database issue):D117-22 [PMID: 25378322]
Nucleic Acids Res. 2012 Jan;40(Database issue):D210-5 [PMID: 22135294]
Methods Mol Biol. 2014;1182:289-305 [PMID: 25055920]
Nucleic Acids Res. 2015 Jan;43(Database issue):D1049-56 [PMID: 25428369]
Nucleic Acids Res. 2012 Jan;40(Database issue):D1144-9 [PMID: 22086960]
Nucleic Acids Res. 2012 Jan;40(Database issue):D1030-5 [PMID: 22135302]
Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85 [PMID: 25361968]
Nucleic Acids Res. 2011 Jan;39(Database issue):D392-401 [PMID: 21036868]
Nucleic Acids Res. 2015 Jan;43(Database issue):D670-81 [PMID: 25428374]
Nucleic Acids Res. 2014 Jan;42(Database issue):D496-502 [PMID: 24214991]
Nucleic Acids Res. 2014 Jan;42(Database issue):D531-6 [PMID: 24214993]
Nucleic Acids Res. 2014 Jan;42(Database issue):D1-6 [PMID: 24316579]
Nucleic Acids Res. 2014 Jan;42(Database issue):D44-9 [PMID: 24194602]
Nucleic Acids Res. 2012 Jan;40(Database issue):D54-6 [PMID: 22009675]
PLoS One. 2014;9(1):e85744 [PMID: 24465676]
PLoS One. 2011;6(3):e17911 [PMID: 21445301]
Nucleic Acids Res. 2014 Jan;42(Database issue):D503-9 [PMID: 24157837]
Nucleic Acids Res. 2015 Jan;43(Database issue):D181-6 [PMID: 25332392]
Nucleic Acids Res. 2015 Jan;43(Database issue):D789-98 [PMID: 25428349]
Nucleic Acids Res. 2011 Jan;39(Database issue):D991-6 [PMID: 21045063]
Nucleic Acids Res. 2015 Jan;43(Database issue):D18-22 [PMID: 25477381]
Nucleic Acids Res. 2015 Jan;43(Database issue):D856-61 [PMID: 25398901]
Biol Direct. 2012;7:43; discussion 43 [PMID: 23190475]

MeSH Term

Biomedical Research
Databases, Factual
Genome, Human
Humans
Internet
Journal Article Research Support, Non-U.S. Gov't Review

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