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Frontiers in microbiology
2017;8 2282.

Evolutionarily Conserved , T1SS, and Hydrogenase System in Rhizobia of and .

Hui Yan, Jian Bo Xie, Zhao Jun Ji, Na Yuan, Chang Fu Tian, Shou Kun Ji, Zhong Yu Wu, Liang Zhong, Wen Xin Chen, Zheng Lin Du, En Tao Wang, Wen Feng Chen
Author Information
  1. Hui Yan: State Key Laboratory of Agro-Biotechnology, College of Biological Sciences and Rhizobium Research Center, China Agricultural University, Beijing, China.
  2. Jian Bo Xie: National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.
  3. Zhao Jun Ji: State Key Laboratory of Agro-Biotechnology, College of Biological Sciences and Rhizobium Research Center, China Agricultural University, Beijing, China.
  4. Na Yuan: Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
  5. Chang Fu Tian: State Key Laboratory of Agro-Biotechnology, College of Biological Sciences and Rhizobium Research Center, China Agricultural University, Beijing, China.
  6. Shou Kun Ji: State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing, China.
  7. Zhong Yu Wu: State Key Laboratory of Agro-Biotechnology, College of Biological Sciences and Rhizobium Research Center, China Agricultural University, Beijing, China.
  8. Liang Zhong: State Key Laboratory of Agro-Biotechnology, College of Biological Sciences and Rhizobium Research Center, China Agricultural University, Beijing, China.
  9. Wen Xin Chen: State Key Laboratory of Agro-Biotechnology, College of Biological Sciences and Rhizobium Research Center, China Agricultural University, Beijing, China.
  10. Zheng Lin Du: Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
  11. En Tao Wang: Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico, Mexico.
  12. Wen Feng Chen: State Key Laboratory of Agro-Biotechnology, College of Biological Sciences and Rhizobium Research Center, China Agricultural University, Beijing, China.
PMID: 29209294 DOI: 10.3389/fmicb.2017.02282

Abstract

species are the main microsymbionts associated with the medicinal or sand-fixation plants and (AC) in temperate regions of China, while all the strains isolated from each of these plants could nodulate both of them. However, strain CCBAU01603 could nodulate AC plants and it's a high efficiency symbiotic and competitive strain with . Therefore, the common features shared by these symbiotic rhizobia in genera of and still remained undiscovered. In order to study the genomic background influencing the host preference of these AC symbiotic strains, the whole genomes of two ( CCBAU01550, CCBAU45272) and five representative strains ( CCBAU01583, CCBAU01570, CCBAU01502, CCBAU01399, and CCBAU01603) originally isolated from AC plants were sequenced, respectively. As results, type III secretion systems (T3SS) of AC rhizobia evolved in an irregular pattern, while an evolutionarily specific region including , T1SS, and a hydrogenase system was detected to be conserved in all these AC rhizobia. Moreover, was verified to be prevalently distributed in other AC rhizobia and was presumed as a factor affecting the nodule formation process. In conclusion, this research interpreted the multifactorial features of the AC rhizobia that may be associated with their host specificity at cross-nodulation group, including , T1SS as the possible main determinants; and , hydrogenase system, and T3SS as factors regulating the bacteroid formation or nitrogen fixation efficiency.

Keywords

Astragalus Caragana Mesorhizobium T1SS hydrogenase system nodE nodO symbiotic specificity

References

  1. Gigascience. 2012 Dec 27;1(1):18 [PMID: 23587118]
  2. Mol Microbiol. 1995 Jun;16(6):1123-36 [PMID: 8577248]
  3. Appl Environ Microbiol. 1994 Feb;60(2):554-61 [PMID: 8135515]
  4. Syst Appl Microbiol. 2017 Mar;40(2):114-119 [PMID: 28063627]
  5. Mol Plant Microbe Interact. 1999 Apr;12(4):293-318 [PMID: 10188270]
  6. Proc Natl Acad Sci U S A. 1991 Jun 15;88(12):5355-9 [PMID: 11607193]
  7. Nucleic Acids Res. 1998 Jan 15;26(2):544-8 [PMID: 9421513]
  8. Proc Natl Acad Sci U S A. 2012 May 29;109(22):8629-34 [PMID: 22586130]
  9. Syst Appl Microbiol. 2009 Aug;32(5):351-61 [PMID: 19195810]
  10. Proc Natl Acad Sci U S A. 1976 Apr;73(4):1207-11 [PMID: 16592307]
  11. Mol Plant Microbe Interact. 2009 Dec;22(12 ):1546-54 [PMID: 19888820]
  12. Mol Plant Microbe Interact. 1996 Jan;9(1):74-7 [PMID: 8589426]
  13. Mol Biol Evol. 2013 Dec;30(12):2725-9 [PMID: 24132122]
  14. DNA Res. 2002 Dec 31;9(6):189-97 [PMID: 12597275]
  15. BMC Microbiol. 2009 Feb 19;9 Suppl 1:S2 [PMID: 19278550]
  16. FEMS Microbiol Lett. 2008 Aug;285(1):1-9 [PMID: 18616593]
  17. Mol Microbiol. 1992 Jan;6(2):231-8 [PMID: 1545707]
  18. Sci Rep. 2015 Jul 27;5:12470 [PMID: 26212107]
  19. BMC Genomics. 2015 May 02;16:348 [PMID: 25933608]
  20. Bioinformatics. 2007 Mar 15;23(6):673-9 [PMID: 17237039]
  21. Proc Natl Acad Sci U S A. 1994 Oct 11;91(21):9990-4 [PMID: 7524090]
  22. J Biol Chem. 1993 Sep 25;268(27):20134-42 [PMID: 8376372]
  23. J Bacteriol. 2006 Jun;188(12):4474-86 [PMID: 16740954]
  24. Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3834-9 [PMID: 16505379]
  25. Int J Syst Evol Microbiol. 2008 Nov;58(Pt 11):2646-53 [PMID: 18984708]
  26. Bioinformatics. 2012 Feb 1;28(3):416-8 [PMID: 22130594]
  27. Syst Appl Microbiol. 2012 Jun;35(4):239-45 [PMID: 22463809]
  28. FEMS Microbiol Lett. 2006 Jun;259(2):317-25 [PMID: 16734796]
  29. FEMS Microbiol Lett. 2008 Sep;286(2):263-73 [PMID: 18657113]
  30. Mol Plant Microbe Interact. 2015 Dec;28(12):1338-52 [PMID: 26389798]
  31. Syst Appl Microbiol. 2016 Mar;39(2):141-9 [PMID: 26915496]
  32. Proc Natl Acad Sci U S A. 1997 Apr 29;94(9):4336-41 [PMID: 9113990]
  33. Mol Microbiol. 1998 Jun;28(6):1381-9 [PMID: 9680225]
  34. Plant Physiol. 1989 Jan;89(1):78-85 [PMID: 16666550]
  35. J Bacteriol. 1997 Aug;179(16):5087-93 [PMID: 9260950]
  36. Mol Gen Genet. 1990 Jun;222(1):81-6 [PMID: 2233683]
  37. Mol Plant Microbe Interact. 1996 Nov;9(8):671-80 [PMID: 8870266]
  38. PLoS Comput Biol. 2011 Oct;7(10):e1002195 [PMID: 22039361]
  39. Curr Microbiol. 2014 Feb;68(2):239-46 [PMID: 24121614]
  40. FEMS Microbiol Lett. 2005 Dec 1;253(1):83-8 [PMID: 16216440]
  41. Front Plant Sci. 2014 Mar 27;5:114 [PMID: 24723933]
  42. ISME J. 2016 Jan;10 (1):64-74 [PMID: 26161635]
  43. EMBO J. 1990 Feb;9(2):349-54 [PMID: 2303029]
  44. Biochim Biophys Acta. 2014 Aug;1843(8):1629-41 [PMID: 24129268]
  45. J Bacteriol. 1997 Apr;179(7):2103-8 [PMID: 9079892]
  46. Genome Biol. 2013 Feb 20;14(2):R17 [PMID: 23425606]
  47. Mol Plant Microbe Interact. 2010 Feb;23 (2):223-34 [PMID: 20064065]
  48. J Bacteriol. 1994 Feb;176(3):620-33 [PMID: 8300517]
  49. Appl Environ Microbiol. 2002 Oct;68(10):4915-24 [PMID: 12324339]
  50. Mol Biol Evol. 2006 Feb;23(2):254-67 [PMID: 16221896]
  51. Plant Physiol. 2001 Dec;127(4):1484-92 [PMID: 11743092]
  52. Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):17131-6 [PMID: 24082124]
  53. Proc Natl Acad Sci U S A. 1997 Jun 10;94(12):6019-24 [PMID: 9177161]
  54. Syst Biol. 2010 May;59(3):307-21 [PMID: 20525638]
  55. Appl Environ Microbiol. 2005 Nov;71(11):7536-8 [PMID: 16269797]
  56. Bioinformatics. 2007 Nov 1;23(21):2947-8 [PMID: 17846036]
  57. Appl Environ Microbiol. 2009 Jun;75(12):4035-45 [PMID: 19376903]
Journal Article

Word Cloud

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