Method for Detection of miRNAs in Non-Model Organisms with Unreported Database.

Parveen Bansal, Ashish Kumar, Sudhir Chandna, Malika Arora, Renu Bansal
Author Information
  1. Parveen Bansal: University Centre of Excellence in Research, Baba Farid University of Health Sciences, Faridkot, Punjab, India. bansal66@yahoo.com.
  2. Ashish Kumar: Texas Biomedical Research Institute, San Antonio, TX, USA.
  3. Sudhir Chandna: Division of Natural Radiation Response Mechanisms, Institute of Nuclear Medicine and Allied Sciences, Timarpur, Delhi, India.
  4. Malika Arora: Multidisciplinary Research Unit, Indian Council of Medical Research, GGSMCH, Faridkot, Punjab, India.
  5. Renu Bansal: Department of Microbiology, GGSMCH, Faridkot, Punjab, India.

Abstract

Non-model organisms are studied very frequently, as a simple accessible and convenient system to investigate the role of miRNAs in particular aspect of biology or disease. However, the unavailability of the annotated genome and hence miRNA database of these non-model organisms pose a major constraint for using them more efficiently. Here, we describe a new method to identify miRNAs in non-model organisms without complex sequencing strategies and using miRNAs from close relative organisms as proxy/reference sequences.

Keywords

MeSH Term

Animals
Databases, Nucleic Acid
MicroRNAs
Sequence Analysis, RNA

Chemicals

MicroRNAs

Word Cloud

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