Molecular and functional heterogeneity of IL-10-producing CD4 T cells.

Leonie Brockmann, Shiwa Soukou, Babett Steglich, Paulo Czarnewski, Lilan Zhao, Sandra Wende, Tanja Bedke, Can Ergen, Carolin Manthey, Theodora Agalioti, Maria Geffken, Oliver Seiz, Sara M Parigi, Chiara Sorini, Jens Geginat, Keishi Fujio, Thomas Jacobs, Thomas Roesch, Jacob R Izbicki, Ansgar W Lohse, Richard A Flavell, Christian Krebs, Jan-Ake Gustafsson, Per Antonson, Maria Grazia Roncarolo, Eduardo J Villablanca, Nicola Gagliani, Samuel Huber
Author Information
  1. Leonie Brockmann: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  2. Shiwa Soukou: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  3. Babett Steglich: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  4. Paulo Czarnewski: Immunology and Allergy Unit, Department of Medicine, Solna, Karolinska Institute and University Hospital, 17176, Stockholm, Sweden. ORCID
  5. Lilan Zhao: Department of General, Visceral and Thoracic Surgery, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  6. Sandra Wende: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  7. Tanja Bedke: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  8. Can Ergen: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  9. Carolin Manthey: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  10. Theodora Agalioti: Department of General, Visceral and Thoracic Surgery, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  11. Maria Geffken: Institute of Transfusion Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  12. Oliver Seiz: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  13. Sara M Parigi: Immunology and Allergy Unit, Department of Medicine, Solna, Karolinska Institute and University Hospital, 17176, Stockholm, Sweden.
  14. Chiara Sorini: Immunology and Allergy Unit, Department of Medicine, Solna, Karolinska Institute and University Hospital, 17176, Stockholm, Sweden. ORCID
  15. Jens Geginat: INGM-National Institute of Molecular Genetics "Romeo ed Enrica Invernizzi", 20122, Milan, Italy.
  16. Keishi Fujio: Department of Allergy and Rheumatology, Graduate School of Medicine, The University of Tokyo, 113-8655, Tokyo, Japan.
  17. Thomas Jacobs: Department of Immunology, Bernhard-Nocht-Institute of Tropical Medicine, 20359, Hamburg, Germany.
  18. Thomas Roesch: Department for Interdisciplinary Endoscopy, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  19. Jacob R Izbicki: Department of General, Visceral and Thoracic Surgery, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  20. Ansgar W Lohse: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  21. Richard A Flavell: Department of Immunobiology, School of Medicine, Yale University, New Haven, CT, 06520, USA. ORCID
  22. Christian Krebs: III. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
  23. Jan-Ake Gustafsson: Department of Biosciences and Nutrition, Karolinska Institutet, 17177, Stockholm, Sweden.
  24. Per Antonson: Department of Biosciences and Nutrition, Karolinska Institutet, 17177, Stockholm, Sweden.
  25. Maria Grazia Roncarolo: Division of Stem Cell Transplantation and Regenerative Medicine, Department of Pediatrics, ISCBRM, Stanford School of Medicine, 94304, Stanford, CA, USA.
  26. Eduardo J Villablanca: Immunology and Allergy Unit, Department of Medicine, Solna, Karolinska Institute and University Hospital, 17176, Stockholm, Sweden. ORCID
  27. Nicola Gagliani: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany. n.gagliani@uke.de.
  28. Samuel Huber: I. Department of Medicine, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany. shuber@uke.de.

Abstract

IL-10 is a prototypical anti-inflammatory cytokine, which is fundamental to the maintenance of immune homeostasis, especially in the intestine. There is an assumption that cells producing IL-10 have an immunoregulatory function. However, here we report that IL-10-producing CD4 T cells are phenotypically and functionally heterogeneous. By combining single cell transcriptome and functional analyses, we identified a subpopulation of IL-10-producing Foxp3 CD4 T cells that displays regulatory activity unlike other IL-10-producing CD4 T cells, which are unexpectedly pro-inflammatory. The combinatorial expression of co-inhibitory receptors is sufficient to discriminate IL-10-producing CD4 T cells with regulatory function from others and to identify them across different tissues and disease models in mice and humans. These regulatory IL-10-producing Foxp3 CD4 T cells have a unique transcriptional program, which goes beyond the regulation of IL-10 expression. Finally, we found that patients with Inflammatory Bowel Disease demonstrate a deficiency in this specific regulatory T-cell subpopulation.

References

  1. Elife. 2015 Jul 14;4:e08009 [PMID: 26173179]
  2. J Exp Med. 2011 May 9;208(5):1027-40 [PMID: 21518800]
  3. Oncogene. 2005 Apr 18;24(17):2810-26 [PMID: 15838517]
  4. Blood. 2016 Apr 14;127(15):1881-5 [PMID: 26941402]
  5. J Exp Med. 2018 Jul 2;215(7):1823-1838 [PMID: 29773644]
  6. PLoS One. 2013;8(1):e53822 [PMID: 23349747]
  7. F1000Res. 2016 Aug 31;5:2122 [PMID: 27909575]
  8. Sci Immunol. 2017 Apr 7;2(10): [PMID: 28738016]
  9. J Immunol. 2009 Jul 15;183(2):797-801 [PMID: 19570826]
  10. Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2891-E2900 [PMID: 28320933]
  11. F1000Res. 2015 Oct 14;4:1070 [PMID: 26674615]
  12. Eur J Immunol. 2008 Nov;38(11):3101-13 [PMID: 18924213]
  13. PLoS One. 2017 Sep 19;12(9):e0184985 [PMID: 28926619]
  14. J Allergy Clin Immunol. 2016 Jan;137(1):318-321.e5 [PMID: 26318071]
  15. Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13974-9 [PMID: 19666526]
  16. J Transl Med. 2017 Feb 21;15(1):40 [PMID: 28222739]
  17. Proc Natl Acad Sci U S A. 2002 May 28;99(11):7604-9 [PMID: 12032330]
  18. Nat Rev Cancer. 2013 Aug;13(8):585-95 [PMID: 23842645]
  19. Nat Biotechnol. 2013 Jun;31(6):545-52 [PMID: 23685480]
  20. Genome Biol. 2014;15(12):550 [PMID: 25516281]
  21. Transplantation. 2015 Aug;99(8):1582-9 [PMID: 25989499]
  22. Nat Immunol. 2014 May;15(5):473-81 [PMID: 24633226]
  23. Mucosal Immunol. 2014 Nov;7(6):1416-28 [PMID: 24803164]
  24. Gastroenterology. 2012 Aug;143(2):347-55 [PMID: 22549091]
  25. Gastroenterology. 2005 Jun;128(7):1868-78 [PMID: 15940622]
  26. Nat Immunol. 2016 Jul;17(7):834-43 [PMID: 27213691]
  27. Sci Rep. 2016 Jul 13;6:29673 [PMID: 27406916]
  28. J Clin Invest. 2006 Mar;116(3):607-14 [PMID: 16511593]
  29. Nature. 2016 Feb 25;530(7591):434-40 [PMID: 26886799]
  30. Nat Immunol. 2010 Sep;11(9):846-53 [PMID: 20676092]
  31. Blood. 2004 Nov 1;104(9):2840-8 [PMID: 15238416]
  32. Clin Exp Immunol. 1995 Jun;100(3):452-6 [PMID: 7774055]
  33. J Immunol. 2015 Jul 15;195(2):488-97 [PMID: 26056255]
  34. World J Gastroenterol. 2013 Jul 7;19(25):3931-41 [PMID: 23840137]
  35. Chimerism. 2014;5(3-4):75-9 [PMID: 26650878]
  36. Nat Med. 2015 Jun;21(6):638-46 [PMID: 26005855]
  37. J Clin Immunol. 2000 Sep;20(5):362-70 [PMID: 11051278]
  38. N Engl J Med. 2009 Nov 19;361(21):2033-45 [PMID: 19890111]
  39. Nat Immunol. 2014 Aug;15(8):767-76 [PMID: 24973820]
  40. J Immunol. 2017 Feb 1;198(3):1130-1141 [PMID: 28003377]
  41. Gastroenterology. 2012 Nov;143(5):1207-1217.e2 [PMID: 22885333]
  42. J Immunol. 2008 Sep 15;181(6):3870-6 [PMID: 18768841]
  43. PLoS Pathog. 2016 Nov 1;12(11):e1005909 [PMID: 27802341]
  44. AIDS Res Hum Retroviruses. 2015 Dec;31(12):1238-46 [PMID: 26192268]
  45. Nat Med. 2013 Jun;19(6):739-46 [PMID: 23624599]
  46. J Autoimmun. 2017 Jan;76:75-84 [PMID: 27653378]
  47. Bioinformatics. 2013 Jan 1;29(1):15-21 [PMID: 23104886]
  48. Clin Exp Immunol. 2003 Oct;134(1):127-37 [PMID: 12974765]
  49. Methods. 2015 Sep 1;85:54-61 [PMID: 26142758]
  50. BMC Immunol. 2009 Oct 27;10:56 [PMID: 19860908]
  51. Mucosal Immunol. 2013 Mar;6(2):324-34 [PMID: 22910217]
  52. Nat Immunol. 2002 Feb;3(2):135-42 [PMID: 11812990]
  53. Immunology. 2017 Sep;152(1):125-137 [PMID: 28497863]
  54. Genome Biol. 2016 Apr 27;17:75 [PMID: 27122128]
  55. Front Immunol. 2017 Sep 25;8:1184 [PMID: 28993775]
  56. Nat Commun. 2017 Jun 21;8:15871 [PMID: 28635957]
  57. Nat Rev Immunol. 2002 Dec;2(12):933-44 [PMID: 12461566]
  58. Nat Immunol. 2010 Sep;11(9):854-61 [PMID: 20676095]
  59. PLoS Comput Biol. 2009 Dec;5(12):e1000598 [PMID: 20011106]
  60. Front Immunol. 2014 Jan 31;5:16 [PMID: 24550909]
  61. Immunol Lett. 2013 Apr;152(1):65-76 [PMID: 23624075]
  62. Nat Med. 2016 Jun;22(6):679-84 [PMID: 27111280]
  63. J Immunol. 2006 Nov 1;177(9):5852-60 [PMID: 17056509]
  64. J Immunol. 2013 Sep 1;191(5):2319-27 [PMID: 23913965]
  65. Eur J Immunol. 2013 Apr;43(4):1063-73 [PMID: 23349024]
  66. Nat Immunol. 2016 Nov;17(11):1322-1333 [PMID: 27595233]
  67. Nat Immunol. 2015 Mar;16(3):267-75 [PMID: 25599562]
  68. J Immunol. 2010 Apr 1;184(7):3433-41 [PMID: 20181882]
  69. J Clin Invest. 2001 Mar;107(5):565-73 [PMID: 11238557]
  70. Nature. 2011 Jul 17;475(7357):514-8 [PMID: 21765430]
  71. Nature. 2015 Jul 9;523(7559):221-5 [PMID: 25924064]
  72. Inflamm Bowel Dis. 2007 Feb;13(2):191-9 [PMID: 17206665]
  73. Nat Nanotechnol. 2017 Jul;12(7):701-710 [PMID: 28436959]
  74. Haematologica. 2015 Apr;100(4):548-57 [PMID: 25661445]
  75. Nat Commun. 2014 Sep 03;5:4741 [PMID: 25182274]
  76. Genes Dev. 2000 Nov 15;14(22):2831-8 [PMID: 11090131]
  77. Front Immunol. 2017 May 26;8:619 [PMID: 28603527]
  78. Transpl Immunol. 2012 Jan;26(1):19-26 [PMID: 22005288]
  79. Nat Immunol. 2017 Apr;18(4):412-421 [PMID: 28166218]
  80. Immunol Rev. 2006 Aug;212:28-50 [PMID: 16903904]

MeSH Term

Animals
CD4-Positive T-Lymphocytes
Humans
Inflammatory Bowel Diseases
Interleukin-10
Mice, Inbred C57BL
Single-Cell Analysis
Transcriptome

Chemicals

IL10 protein, human
IL10 protein, mouse
Interleukin-10