Lung transplantation for patients with severe COVID-19.

Ankit Bharat, Melissa Querrey, Nikolay S Markov, Samuel Kim, Chitaru Kurihara, Rafael Garza-Castillon, Adwaiy Manerikar, Ali Shilatifard, Rade Tomic, Yuliya Politanska, Hiam Abdala-Valencia, Anjana V Yeldandi, Jon W Lomasney, Alexander V Misharin, G R Scott Budinger
Author Information
  1. Ankit Bharat: Division of Thoracic Surgery, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. abharat@nm.org. ORCID
  2. Melissa Querrey: Division of Thoracic Surgery, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  3. Nikolay S Markov: Division of Pulmonary and Critical Care Medicine, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  4. Samuel Kim: Division of Thoracic Surgery, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  5. Chitaru Kurihara: Division of Thoracic Surgery, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
  6. Rafael Garza-Castillon: Division of Thoracic Surgery, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  7. Adwaiy Manerikar: Division of Thoracic Surgery, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  8. Ali Shilatifard: Department of Biochemistry and Molecular Genetics, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  9. Rade Tomic: Division of Pulmonary and Critical Care Medicine, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
  10. Yuliya Politanska: Division of Pulmonary and Critical Care Medicine, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  11. Hiam Abdala-Valencia: Division of Pulmonary and Critical Care Medicine, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  12. Anjana V Yeldandi: Department of Pathology, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
  13. Jon W Lomasney: Department of Pathology, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  14. Alexander V Misharin: Division of Pulmonary and Critical Care Medicine, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID
  15. G R Scott Budinger: Division of Pulmonary and Critical Care Medicine, Northwestern Memorial Hospital, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. ORCID

Abstract

Lung transplantation can potentially be a life-saving treatment for patients with nonresolving COVID-19-associated respiratory failure. Concerns limiting lung transplantation include recurrence of SARS-CoV-2 infection in the allograft, technical challenges imposed by viral-mediated injury to the native lung, and the potential risk for allograft infection by pathogens causing ventilator-associated pneumonia in the native lung. Additionally, the native lung might recover, resulting in long-term outcomes preferable to those of transplant. Here, we report the results of lung transplantation in three patients with nonresolving COVID-19-associated respiratory failure. We performed single-molecule fluorescence in situ hybridization (smFISH) to detect both positive and negative strands of SARS-CoV-2 RNA in explanted lung tissue from the three patients and in additional control lung tissue samples. We conducted extracellular matrix imaging and single-cell RNA sequencing on explanted lung tissue from the three patients who underwent transplantation and on warm postmortem lung biopsies from two patients who had died from COVID-19-associated pneumonia. Lungs from these five patients with prolonged COVID-19 disease were free of SARS-CoV-2 as detected by smFISH, but pathology showed extensive evidence of injury and fibrosis that resembled end-stage pulmonary fibrosis. Using machine learning, we compared single-cell RNA sequencing data from the lungs of patients with late-stage COVID-19 to that from the lungs of patients with pulmonary fibrosis and identified similarities in gene expression across cell lineages. Our findings suggest that some patients with severe COVID-19 develop fibrotic lung disease for which lung transplantation is their only option for survival.

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Grants

  1. I01 CX001777/CSRD VA
  2. HL147290/NIH HHS
  3. HL145478/NIH HHS
  4. P01 AG049665/NIA NIH HHS
  5. U19 AI135964/NIAID NIH HHS
  6. R01 HL153312/NHLBI NIH HHS
  7. P30 CA060553/NCI NIH HHS
  8. R01 HL145478/NHLBI NIH HHS
  9. R01 HL147290/NHLBI NIH HHS
  10. R01 HL147575/NHLBI NIH HHS

MeSH Term

Adult
Aged, 80 and over
COVID-19
COVID-19 Nucleic Acid Testing
Databases, Factual
Disease Progression
Female
Humans
In Situ Hybridization, Fluorescence
Lung
Lung Transplantation
Male
Middle Aged
Pulmonary Fibrosis
RNA-Seq
Recovery of Function
Retrospective Studies
Severity of Illness Index
Single-Cell Analysis
Treatment Outcome