Identification, distribution, and hosts of spp. infecting horticultural crops in Florida, USA with focus on .

Gabrieli Riva, Janete A Brito, Clemen de Oliveira, Marcus Marin, Mengyi Gu, Hung Xuan Bui, Johan Desaeger
Author Information
  1. Gabrieli Riva: Department of Entomology and Nematology, Gulf Coast Research and Education Center, University of Florida, Wimauma, FL, 33598, USA.
  2. Janete A Brito: Florida Department of Agriculture and Consumer Services, Division of Plant Industry, Nematology Section, P.O. Box 147100, Gainesville, FL 32614-7100, USA.
  3. Clemen de Oliveira: Department of Entomology and Nematology, Gulf Coast Research and Education Center, University of Florida, Wimauma, FL, 33598, USA.
  4. Marcus Marin: Department of Plant Pathology, Gulf Coast Research and Education Center, University of Florida, Wimauma, FL, 33598, USA.
  5. Mengyi Gu: Department of Entomology and Nematology, Gulf Coast Research and Education Center, University of Florida, Wimauma, FL, 33598, USA.
  6. Hung Xuan Bui: Department of Entomology and Nematology, Gulf Coast Research and Education Center, University of Florida, Wimauma, FL, 33598, USA.
  7. Johan Desaeger: Department of Entomology and Nematology, Gulf Coast Research and Education Center, University of Florida, Wimauma, FL, 33598, USA.

Abstract

Many root-knot nematode (RKN) species in the genus occur in Florida, including , a species able to overcome RKN resistance genes in many crops. The distribution of these nematodes in horticultural crops is not well known. A RKN survey was conducted in South and Central Florida aiming to: (i) identify RKN infecting vegetables, fruit, and other crops; (ii) document host plants; (iii) determine RKN distribution; and (iv) gain insight on the relatedness of obtained in this study with other populations from the USA and other countries. A total of 304 soil and root samples were collected from 56 plant species cultivated in commercial vegetable and fruit farms, research farms, horticultural gardens, Asian vegetable farms, and natural landscapes in 12 counties. species identification was performed using mitochondrial haplotype-based identification, species-specific primers, DNA sequencing and phylogenetic analysis. RKN were detected in 247 out of 304 (81.25%) root samples collected from September 2019 to January 2023. Five RKN species (, , , and ) were identified. The most prevalent RKN were and , which were found in 25% of the samples. Less prevalent were , found in 16%, and and , found in 8% and 5% of samples, respectively. Mixed populations of and were found in 1% of the samples. Phylogenetic analysis showed low genetic variability among DNA sequences of populations from Florida, other states in the USA, and other countries. New host records found in this study include: a worldwide host record, (); new US continental host records, (), (mixed species - and ). Additionally, new state host records found were , , and sp. (), (), (), and and (). These findings confirm the predominance of tropical RKN species, and especially of , in Florida. and provide new insights into the distribution, prevalence, and hosts of RKN species in horticultural crops in Central and South Florida.

Keywords

References

  1. J Nematol. 2017 Dec;49(4):457-461 [PMID: 29353935]
  2. J Nematol. 2004 Sep;36(3):232-40 [PMID: 19262811]
  3. Plant Dis. 2005 Oct;89(10):1128 [PMID: 30791286]
  4. J Nematol. 2020;52:1-4 [PMID: 32436669]
  5. PLoS One. 2015 Nov 24;10(11):e0143556 [PMID: 26599462]
  6. Sci Rep. 2018 Sep 14;8(1):13816 [PMID: 30217984]
  7. Ecol Evol. 2020 Jun 01;10(12):5391-5401 [PMID: 32607161]
  8. Syst Biol. 2012 May;61(3):539-42 [PMID: 22357727]
  9. J Nematol. 1986 Oct;18(4):533-40 [PMID: 19294223]
  10. Sci Rep. 2016 Mar 04;6:22591 [PMID: 26940543]
  11. Plant Dis. 2012 Oct;96(10):1583 [PMID: 30727335]
  12. Phytopathology. 2023 Jun;113(6):1093-1102 [PMID: 36449528]
  13. J Nematol. 2018;50(4):543-544 [PMID: 31094156]
  14. Plant Dis. 2008 Jul;92(7):1104-1110 [PMID: 30769531]
  15. Plant Dis. 2012 May;96(5):635-647 [PMID: 30727525]
  16. J Nematol. 2004 Mar;36(1):20-35 [PMID: 19262784]
  17. Genetics. 1994 Mar;136(3):903-12 [PMID: 7911772]
  18. J Nematol. 2015 Sep;47(3):169-75 [PMID: 26527837]
  19. J Nematol. 2009 Jun;41(2):128-33 [PMID: 22661785]
  20. J Nematol. 1993 Mar;25(1):1-6 [PMID: 19279734]
  21. J Nematol. 2009 Jun;41(2):134-9 [PMID: 22661786]
  22. Mol Biol Evol. 2020 May 1;37(5):1530-1534 [PMID: 32011700]
  23. J Nematol. 2020;52:1-6 [PMID: 32692022]
  24. Plant Dis. 2016 Jul;100(7):1438-1445 [PMID: 30686187]
  25. J Nematol. 2002 Dec;34(4):319-27 [PMID: 19265950]
  26. J Nematol. 2020;52:1-3 [PMID: 32141268]
  27. J Nematol. 2023 Aug 24;55(1):20230034 [PMID: 37622050]
  28. Genome Biol Evol. 2019 Dec 1;11(12):3341-3352 [PMID: 31536115]
  29. J Nematol. 1982 Jul;14(3):332-8 [PMID: 19295716]
  30. Nat Methods. 2017 Jun;14(6):587-589 [PMID: 28481363]
  31. J Nematol. 2007 Dec;39(4):327-32 [PMID: 19259507]
  32. J Nematol. 2016 Sep;48(3):193-202 [PMID: 27765993]

Word Cloud

Created with Highcharts 10.0.0RKNspeciesFloridafoundcropshostsamplesdistributionhorticulturalpopulationsUSAfarmsidentificationrecordsnewroot-knotnematodesSouthCentralinfectingfruitstudycountries304rootcollectedvegetableDNAanalysis25%prevalenthostsManynematodegenusoccurincludingableovercomeresistancegenesmanywellknownsurveyconductedaimingto:identifyvegetablesiidocumentplantsiiidetermineivgaininsightrelatednessobtainedtotalsoil56plantcultivatedcommercialresearchgardensAsiannaturallandscapes12countiesperformedusingmitochondrialhaplotype-basedspecies-specificprimerssequencingphylogeneticdetected24781September2019January2023FiveidentifiedLess16%8%5%respectivelyMixed1%PhylogeneticshowedlowgeneticvariabilityamongsequencesstatesNewinclude:worldwiderecordUScontinentalmixed-AdditionallystatespfindingsconfirmpredominancetropicalespeciallyprovideinsightsprevalenceIdentificationsppfocusmolecularphylogeny

Similar Articles

Cited By

No available data.