The National Genomics Data Center is in collaboration with partner databases. If you are interested in building any collaboration with us or would like to become our partner, please feel free to contact us. Below is a list of our partner databases.
| Database Name | Description | Affiliation | Database Commons |
|---|---|---|---|
| Animal-APAdb | A comprehensive animal alternative polyadenylation database | Huazhong Agricultural University | View |
| Animal-eRNAdb | A comprehensive animal enhancer RNA database | Huazhong Agricultural University | View |
| Animal-SNPAtlas | Animal-SNPAtlas: a comprehensive SNP database for multiple animals. | Huazhong Agricultural University | View |
| AnimalTFDB | Animal Transcription Factor Database | Huazhong University of Science and Technology | View |
| BBCancer | BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers | Sun Yat-sen University | View |
| CancerSEA | CancerSEA: a cancer single-cell state atlas | Harbin Medical University | View |
| CellMarker | CellMarker: a manually curated resource of cell markers in human and mouse. | Harbin Medical University | View |
| CGDB | Circadian Gene Database | Huazhong University of Science and Technology | View |
| CGGA | Chinese Glioma Genome Atlas | Capital Medical University | View |
| circAtlas | circAtlas 2.0 | Beijing Institutes of Life Science | View |
| ConsRM | Collection and large-scale prediction of the evolutionarily conserved RNA methylation sites | Xi’an Jiaotong-Liverpool University | |
| CPLM | database of lysine modifications | Huazhong University of Science and Technology | View |
| dbPAF | database of Phospho-sites in Animals and Fungi | Huazhong University of Science and Technology | View |
| dbPPT | database of Phospho-sites in PlanTs | Huazhong University of Science and Technology | View |
| dbPSP | database of Phosphorylation Sites in Prokaryotes | Huazhong University of Science and Technology | View |
| DEG | Database of Essential Genes | Tianjin University | View |
| DirectRMDB | Fujian Medical University | ||
| DiseaseEnhancer | DiseaseEnhancer: a resource of human disease-associated enhancer catalog. | Harbin Medical University | View |
| DoriC | Database of Replication Origins | Tianjin University | View |
| DrLLPS | Data resource of liquid-liquid phase separation | Huazhong University of Science and Technology | View |
| EKPD | Eukaryotic Kinase and Phosphatase Database | Huazhong University of Science and Technology | View |
| EPSD | Eukaryotic Phosphorylation Site Database | Huazhong University of Science and Technology | View |
| EVAtlas | In EVAtlas, we performed a unified read dynamic assignment algorithm (RDAA) considering mismatch and multi-mapping reads to quantify the expression profiles of seven ncRNA types (miRNA, snoRNA, piRNA, snRNA, rRNA, tRNA and Y RNA) in more than 2,030 high-q | Huazhong University of Science and Technology | View |
| EVmiRNA | EVmiRNA is a database of miRNA profiling in extracellular vesicles | Huazhong University of Science and Technology | View |
| GenTree | GenTree, the time tree of genes along the evolutionary history | Institute of Zoology | View |
| hTFtarget | In this hTFtarget database, we collected comprehensive human TF ChIP-Seq data and customized an analysis workflow to identify reliable TF targets with taking epigenomic states into account | Huazhong University of Science and Technology | View |
| iEKPD | Integrated annotations for Eukaryotic protein Kinases, protein Phosphatases & phosphoprotein-binding Domains | Huazhong University of Science and Technology | View |
| IMP | Bridging the Gap for Medicinal Plant Genomics | National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences | |
| iPCD | database of PCD regulators | Huazhong University of Science and Technology | View |
| iUUCD | integrated annotations for Ubiquitin and Ubiquitin-like Conjugation Database | Huazhong University of Science and Technology | View |
| LeukemiaDB | LeukemiaDB collects 3068 samples in 188 leukemia-associated RNA-seq datasets from NCBI GEO and SRA. | Huazhong University of Science and Technology | View |
| lnCAR | lnCAR | A comprehensive resource for lncRNAs from Cancer Arrays | Sun Yat-sen University | View |
| LncRNADisease | LncRNA diseases interaction database. | Peking University | View |
| lncRNASNP | lncRNASNP v3: a comprehensive resources for functional variants in long non-coding RNAs. | Huazhong Agricultural University | View |
| lncRNASNP2 | A database providing comprehensive resources of single nucleotide polymorphisms (SNPs) in human/mouse lncRNAs. | Huazhong University of Science and Technology | View |
| m5C-Atlas | a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome | Fujian Medical University | |
| m6A-Atlas | a comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome | Fujian Medical University | |
| M6A-TSHub | unveiling the context-specific m6A methylation and m6A-affecting mutations in 23 human tissues | Xi’an Jiaotong-Liverpool University | |
| m7GHub | an updated database for decoding the N7-methylguanosine (m7G) epitranscriptome | Nanjing University of Chinese Medicine | |
| MiCroKiTS | Midbody, Centrosome, Kinetochore, Telomere and Spindle | Huazhong University of Science and Technology | View |
| miRNASNP | miRNASNP-v3 is a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets | Huazhong University of Science and Technology | View |
| ncRNA-eQTL | A database to evaluate the effects of SNPs on ncRNA expression | Huazhong Agricultural University | View |
| Pancan-meQTL | A database to evaluate the effects of SNPs on methylation. | Huazhong Agricultural University | View |
| Pancan-MNVQTLdb | A database to evaluate the effects of MNVs on multiple molecular phenotypes | Huazhong Agricultural University | View |
| PancanQTL | A database to systematically identify cis-eQTLs and trans-eQTLs in 33 cancer types. | Huazhong Agricultural University | View |
| PceRBase | Plant competing endogenous RNA Database | Zhejiang University | View |
| PEA | Platelet Expression Atlas (PEA) is a comprehensive expression resource and functional analysis platform for human platelets | Huazhong University of Science and Technology | View |
| piRNAdb | A manually curated resource of piRNAs, which focused on piRNA function analyses as well as piRNA annotation. | Institute of Biophysics | View |
| Plant-ImputeDB | Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation | Huazhong Agricultural University | View |
| PlantTFDB | Plant transcription factor database, a portal for the functional and evolutionary study of plant transcription factors | Peking University | View |
| PLMD | Protein Lysine Modifications Database | Huazhong University of Science and Technology | |
| PTMD | A database of human disease-associated post-translational modifications | Huazhong University of Science and Technology | View |
| RhesusBase Genes | A Knowledgebase for Monkey Research Community | Peking University | View |
| RMDisease | an updated database of genetic variants that affect RNA modifications with disease and trait implication | Xi’an Jiaotong-Liverpool University | |
| RMVar | RNA Modification associated variants database | Sun Yat-sen University | View |
| ScRAPdb | Saccharomyces cerevisiae Reference Assembly Panel Database | Sun Yat-sen University | |
| SEECancer | SEECancer: a resource for somatic events in evolution of cancer genome. | Harbin Medical University | View |
| SEGreg | Database of specifically expressed genes and regulation | Huazhong University of Science and Technology | View |
| SNP2APA | A database to evaluate the effects of SNPs on APA events | Huazhong Agricultural University | View |
| THANATOS | THe Autophagy, Necrosis, ApopTosis OrchestratorS | Huazhong University of Science and Technology | View |
| VarClear | Gene Variation Interpretation Database | VarClear | |
| VFDB | Virulence Factor Database | Chinese Academy of Medical Sciences and Peking Union Medical College | View |
| WERAM | Eukaryotic Writers, Erasers and Readers protein of Histone Acetylation and Methylation system Database | Huazhong University of Science and Technology | View |
| ZCURVE_CoVdb | Database of Essential Genes | Tianjin University | View |