BnaA02.YTG1 - Plant Editosome Database

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Brassica napus

BnaA02T0141700ZS

Chloroplast

ndhD

CDS

ZS11

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	HB1	The top first leaves of transgenic-positive in the complemented transgenic line PT1	NA	No mutant	Normal	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	71.10%	High	None	NONE
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	hb1	The top first leaves of transgenic-negative plants (named hb1) in the complemented transgenic line PT1	NA	Recessive	NA	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	46.50%	Medium	Decreased	NONE
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	hb4	The top fourth leaves of transgenic-negative plants (named hb4) in the complemented transgenic line PT1	NA	Recessive	NA	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	67.10%	High	Restored	NONE

Brassica napus

BnaA02T0141700ZS

Chloroplast

ndhF

290

CDS

ZS11

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	HB1	The top first leaves of transgenic-positive in the complemented transgenic line PT1	NA	No mutant	Normal	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	64.80%	High	None	NONE
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	hb1	The top first leaves of transgenic-negative plants (named hb1) in the complemented transgenic line PT1	NA	Recessive	NA	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	37.80%	Low	Decreased	NONE
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	hb4	The top fourth leaves of transgenic-negative plants (named hb4) in the complemented transgenic line PT1	NA	Recessive	NA	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	57.30%	Medium	Restored	NONE

Brassica napus

BnaA02T0141700ZS

Chloroplast

ndhG

CDS

ZS11

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	HB1	The top first leaves of transgenic-positive in the complemented transgenic line PT1	NA	No mutant	Normal	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	86.90%	High	None	NONE
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	hb1	The top first leaves of transgenic-negative plants (named hb1) in the complemented transgenic line PT1	NA	Recessive	NA	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	51.00%	Medium	Decreased	NONE
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	hb4	The top fourth leaves of transgenic-negative plants (named hb4) in the complemented transgenic line PT1	NA	Recessive	NA	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	86.50%	High	Restored	NONE

Brassica napus

BnaA02T0141700ZS

Chloroplast

petL

CDS

ZS11

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	HB1	The top first leaves of transgenic-positive in the complemented transgenic line PT1	NA	No mutant	Normal	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	92.10%	High	None	NONE
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	hb1	The top first leaves of transgenic-negative plants (named hb1) in the complemented transgenic line PT1	NA	Recessive	NA	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	79.60%	High	Decreased	NONE
ytg, a chlorophyll-deficient mutant isolated from the progeny of a restorer recurrent-selection population	hb4	The top fourth leaves of transgenic-negative plants (named hb4) in the complemented transgenic line PT1	NA	Recessive	NA	Leaf	Five-leaf stage	Bulk sequencing and pyrosequencing	91.60%	High	Restored	NONE

Editing Factor:	BnaA02.YTG1
Synonym:	NA
Description:	BnaA02.YTG1 interacted with MORF2, MORF8, and OZ1; RNA editing of the ndhD-2, ndhF-290, petL-5, and ndhG-50 plastid transcripts was affected in ytg
Protein Family:	Tetratricopeptide repeat (TPR) protein
Subclass:	NA
Physical Interaction:	MORF2; MORF8; OZ1
Construct Structure:	TPR
Gene ID & Species:	BnaA02T0141700ZS (Brassica napus)
Edited Gene(s):	ndhD ndhF petL ndhG
Editing Type(s):	C-to-U (12)
Publication(s):	NA

Summary

Editing Details