EMP18 - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor: EMP18
Synonym: Empty Pericarp18
Description: Null mutation of Emp18 arrests embryo and endosperm development at an early stage in maize, resulting in embryo lethality; Mutants are deficient in the cytidine (C)-to-uridine (U) editing at atp6-635 and cox2-449, which converts a Leu to Pro in ATP6 and a Met to Thr in Cox2; The atp6 gene encodes the subunit a of F1 Fo -ATPase; The Leu to Pro alteration disrupts an α-helix of subunit a, resulting in a dramatic reduction in assembly and activity of F1 Fo -ATPase holoenzyme and an accumulation of free F1 -subcomplex
Protein Family: PPR
Subclass: DYW
Physical Interaction: NA
Construct Structure: PLS-E1/E2-E+-DYW
Gene ID & Species: GRMZM2G471348 (Zea mays)
Edited Gene(s): atp6    cox2
Editing Type(s): C-to-U (6)
Publication(s): [1] EMP18 functions in mitochondrial atp6 and cox2 transcript editing and is essential to seed development in maize., The New phytologist, 2019. [PMID=30168136]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Position Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Zea mays GRMZM2G471348 Mitochondrion atp6 635 CDS NA NA NA NA C-to-U CCG=>CUG P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
W22WTControlControlControlNormalKernel10-15 DAPqRT-PCR and sequencing100.00%CompleteNone30168136
W22emp18-1Mutator (Mu) insertionA Mu insertion in the E2 domain of the EMP18 proteinHeterozygousEmbryo lethalityKernel10-15 DAPqRT-PCR and sequencing0.00%UneditedAbsent30168136
W22emp18-1Mutator (Mu) insertionA Mu insertion in the E+ domain of the EMP18 proteinHeterozygousEmbryo lethalityKernel10-15 DAPqRT-PCR and sequencing0.00%UneditedAbsent30168136
Zea mays GRMZM2G471348 Mitochondrion cox2 449 CDS NA NA NA NA C-to-U ACG=>AUG T=>M Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
W22WTControlControlControlNormalKernel10-15 DAPqRT-PCR and sequencing100.00%CompleteNone30168136
W22emp18-2Mutator (Mu) insertionA Mu insertion in the E2 domain of the EMP18 proteinHeterozygousEmbryo lethalityKernel10-15 DAPqRT-PCR and sequencing0.00%UneditedAbsent30168136
W22emp18-2Mutator (Mu) insertionA Mu insertion in the E+ domain of the EMP18 proteinHeterozygousEmbryo lethalityKernel10-15 DAPqRT-PCR and sequencing50.00%MediumDecreased30168136
Last update: Feb 2026 (version 2.0)