ORRM5 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: ORRM5
Synonym: ATGRP2, GLYCINE RICH PROTEIN 2, GLYCINE-RICH RNA-BINDING PROTEIN 2, GR-RBP2, GRP2, RBGA5, RNA-BINDING GLYCINE-RICH PROTEIN A5
Description: Encodes an RNA recognition motif-containing protein which has an inhibitory impact on plant organelle editing.
Protein Family: ORRM
Subclass: NA
Construct Structure: RRM
Gene ID & Species: AT4G13850 (Arabidopsis thaliana)
Edited Gene(s): atp8    rps3    ccmFN2    rps4    nad4    ccmB    atp1    nad7    nad5    nad3
Editing Type(s): C-to-U (60)
Publication(s): [1] ORRM5, an RNA recognition motif-containing protein, has a unique effect on mitochondrial RNA editing, Journal of Experimental Botany, 2017. [PMID=28549172]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT4G13850 Mitochondrion atp1 1425 CDS C-to-U GUC=>GUU V=>V Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq62.00%HighIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq61.00%HighIncreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq30.00%LowNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion atp8 389 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq52.00%MediumIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq54.00%MediumIncreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq20.00%LowNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmB 128 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq64.00%HighDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq60.00%HighDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq86.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmB 137 CDS C-to-U UCC/UCC=>UUC/UUU S=>F/F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq73.00%HighDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq67.00%HighDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq91.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmB 148 CDS C-to-U CCG/CCG=>UCG/UUG P=>S/L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq73.00%HighDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq68.00%HighDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq90.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmB 149 CDS C-to-U CCG/CCG=>CUG/UUG P=>L/L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq74.00%HighDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq69.00%HighDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq90.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmB 154 CDS C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq75.00%HighDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq70.00%HighDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq91.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmB 159 CDS C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq75.00%HighDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq70.00%HighDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq90.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmB 160 CDS C-to-U CCU=>UCU P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq75.00%HighDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq70.00%HighDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq90.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmB 406 CDS C-to-U CUG=>UUG L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq62.00%HighIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq57.00%MediumIncreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq23.00%LowNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmB 576 CDS C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq74.00%HighIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq71.00%HighIncreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq36.00%LowNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion ccmFN2 320 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq54.00%MediumDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq54.00%MediumDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq78.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion nad3 8 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq95.00%HighIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq92.00%HighIncreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq56.00%MediumNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion nad3 26 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq97.00%HighIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq95.00%HighIncreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq67.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion nad4 1131 CDS C-to-U CUC/CUC=>CUU/UUU L=>L/F Synonymous/Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq56.00%MediumIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq52.00%MediumDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq17.00%PoorNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion nad5 141966 Intronic C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq79.00%HighIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq75.00%HighIncreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq34.00%LowNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion nad7 789 CDS C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq79.00%HighIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq69.00%HighIncreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq20.00%LowNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion rps3 887 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq54.00%MediumDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq56.00%MediumDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq82.00%HighNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion rps3 1344 CDS C-to-U AGC=>AGU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq83.00%HighIncreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq80.00%HighIncreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq52.00%MediumNone28549172
Arabidopsis thaliana AT4G13850 Mitochondrion rps4 175 CDS C-to-U CCG=>UCG P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_059714Corrm5-2T-DNA InsertionT-DNA is inserted in the second exonKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq55.00%MediumDecreased28549172
SALK_135802Corrm5-3T-DNA InsertionT-DNA is inserted in the fourth intronKnockout; HomozygousSlower growth and delayed flowering timeNANASTS-PCRseq52.00%MediumDecreased28549172
SALK_135802CWTNo treatmentWild-type siblings of ORRM5-3No treatmentNo treatmentNANASTS-PCRseq77.00%HighNone28549172
Last update: Jul 2021 (version 1.0)