atp8 - Plant Editosome Database - BIG Data Center

Summary

Gene: atp8
Function: ATP synthase
Species: 13
Editing Factors:7 (DYW2, EMP21, MEF8, NUWA, ORRM4, ORRM5, SlORRM4)
Editing Types:
C-to-U (104)
U-to-C (4)
Editing Events: 110 (C-to-U: 104   U-to-C: 4   NA: 2)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Beta macrocarpaMitochondrion2
C-to-U: 2
215191
215208
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UUC=>UUU
S=>L
F=>F
Beta vulgaris subsp. maritimaMitochondrion2
C-to-U: 2
215274
215291
CDS
CDS
-C-to-U
C-to-U
UUC=>UUU
UCA=>UUA
F=>F
S=>L
Beta vulgaris subsp. vulgarisMitochondrion2
C-to-U: 2
299405
299422
CDS
CDS
-C-to-U
C-to-U
UUC=>UUU
UCA=>UUA
F=>F
S=>L
Citrullus lanatusMitochondrion3
C-to-U: 3
67171
67200
67201
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
CCC=>UYC
UCA=>UUA
CCC=>UYC
P=>S/F
S=>L
P=>S/F
Cucurbita pepoMitochondrion3
C-to-U: 3
949141
949170
949171
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
CCC=>UYC
UCA=>UUA
CCC=>UYC
P=>S/F
S=>L
P=>S/F
Cycas taitungensisMitochondrion2
C-to-U: 2
346135CDS
CDS
+C-to-U
C-to-U
CAA=>UAA
CAA=>UAA
Q=>TERM
Q=>TERM
Ginkgo bilobaMitochondrion1
NA: 1
233055-233543CDS-NANA=>NANA=>NA
Lotus japonicusMitochondrion8
C-to-U: 8
300988
301366
301385
301396
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCC=>CUC
CUC=>UUC
UCA=>UUA
CCA=>CUA
CCC=>CUC
CUC=>UUC
UCA=>UUA
P=>L
P=>L
L=>F
S=>L
P=>L
P=>L
L=>F
S=>L
Millettia pinnataMitochondrion8
C-to-U: 8
107527
107905
107924
107935
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCC=>CUC
CUC=>UUC
UCA=>UUA
CCA=>CUA
CCC=>CUC
CUC=>UUC
UCA=>UUA
P=>L
P=>L
L=>F
S=>L
P=>L
P=>L
L=>F
S=>L
Nelumbo nuciferaMitochondrion7
C-to-U: 7
434323
434332
434349
434360
434378
434502
434754
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UUC=>UUU
UCA=>UUA
UUC=>UUU
CUC=>UUC
CCC=>UCC
UCG=>UUG
P=>L
F=>F
S=>L
F=>F
L=>F
P=>S
S=>L
Ophioglossum californicumMitochondrion20
C-to-U: 18
U-to-C: 2
57957
58104
58113
58197
58201
58206
58226
58344
58377
58567
5'UTR
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
CCG=>CUG
UGA=>CGA
ACA=>AUA
UCA=>UUA
CCG=>CUG
NA=>NA
CCG=>CUG
UCU=>UUU
ACA=>AUA
CCC=>CCU
CCG=>CUG
ACG=>AUG
UCC=>UCU
UCU=>UUU
UGA=>CGA
CCC=>CCU
UCA=>UUA
ACG=>AUG
UCC=>UCU
NA=>NA
P=>L
TERM=>R
T=>I
S=>L
P=>L
NA=>NA
P=>L
S=>F
T=>I
P=>P
P=>L
T=>M
S=>S
S=>F
TERM=>R
P=>P
S=>L
T=>M
S=>S
Psilotum nudumMitochondrion13
C-to-U: 13
295840
295846
296183
296215
296396
296465
296513
296525
296574
296639
296640
296956
297022
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
3'UTR
CDS
5'UTR
CDS
CDS
3'UTR
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>CCU
NA=>NA
UCG=>UUG
AUC=>AUU
CCA=>CUA
CCC=>CUC
CCG=>CUG
NA=>NA
ACC=>AUC
NA=>NA
UCA=>UUA
CGG=>UGG
NA=>NA
P=>P
NA=>NA
S=>L
I=>I
P=>L
P=>L
P=>L
NA=>NA
T=>I
NA=>NA
S=>L
R=>W
NA=>NA
Salvia miltiorrhizaMitochondrion1
NA: 1
485773-486252CDS-NANA=>NANA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)