PPR78 - Plant Editosome Database

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Position Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Callicladium imponens

Mitochondrion

cox1

755

CDS

C-to-U

NA=>NA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	OE in Pp-KO-PPR78	Overexpression moss PPR78 orthologues	NA	Knockout	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	0.00%	Unedited	Similar	38000897

Callicladium imponens

Mitochondrion

rps14

137

CDS

C-to-U

NA=>NA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	OE in Pp-KO-PPR78	Overexpression moss PPR78 orthologues	NA	Knockout	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	18.00%	Poor	Restored	38000897

Ceratodon purpureus

KAG0628082

Mitochondrion

cox1

755

CDS

C-to-U

NA=>NA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	OE in Pp-KO-PPR78	Overexpression moss PPR78 orthologues	NA	Knockout	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	99.00%	High	Restored	38000897

Ceratodon purpureus

KAG0628082

Mitochondrion

rps14

137

CDS

C-to-U

NA=>NA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	OE in Pp-KO-PPR78	Overexpression moss PPR78 orthologues	NA	Knockout	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	99.00%	High	Restored	38000897

Physcomitrium patens

XP_024361076.1

Mitochondrion

ccmFn

1465

CDS

C-to-U

NA=>NA

R=>C

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Control	Control	No mutant	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	99.00%	High	None	38000897

Physcomitrium patens

XP_024361076.1

Mitochondrion

cox1

755

CDS

C-to-U

NA=>NA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Control	Control	No mutant	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	99.00%	High	None	38000897
NA	KO-PPR78	Knockout	NA	Knockout	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	0.00%	Unedited	Absent	38000897

Physcomitrium patens

XP_024361076.1

Mitochondrion

rps14

137

CDS

C-to-U

NA=>NA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Control	Control	No mutant	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	80.00%	High	None	38000897
NA	KO-PPR78	Knockout	NA	Knockout	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	0.00%	Unedited	Absent	38000897

Pseudanomodon attenuatus

Mitochondrion

ccmFn

1465

CDS

C-to-U

NA=>NA

R=>C

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Control	Control	No mutant	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	34.00%	Low	None	38000897

Pseudanomodon attenuatus

Mitochondrion

cox1

755

CDS

C-to-U

NA=>NA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	OE in Pp-KO-PPR78	Overexpression moss PPR78 orthologues	NA	Knockout	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	99.00%	High	Restored	38000897

Pseudanomodon attenuatus

Mitochondrion

rps14

137

CDS

C-to-U

NA=>NA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	OE in Pp-KO-PPR78	Overexpression moss PPR78 orthologues	NA	Knockout	Normal	NA	NA	The Taq-based (Promega, Blirt) PCR assays contained primers	98.00%	High	Restored	38000897

Editing Factor:	PPR78
Synonym:	NA
Description:	NA
Protein Family:	PPR
Subclass:	DYW
Physical Interaction:	NA
Construct Structure:	PLS-E1-E2-DYW
Gene ID & Species:	NA (Callicladium imponens) KAG0628082 (Ceratodon purpureus) XP_024361076.1 (Physcomitrium patens) NA (Pseudanomodon attenuatus)
Edited Gene(s):	cox1 rps14 ccmFn
Editing Type(s):	C-to-U (12)
Publication(s):	[1] Conservation of the moss RNA editing factor PPR78 despite the loss of its known cytidine-to-uridine editing sites is explained by a hidden extra target., The Plant cell, 2024. [PMID=38000897]

Summary

Editing Details