cox1 - Plant Editosome Database - CNCB-NGDC

Summary

Gene: cox1
Function: Cytochrome c oxidase
Species: 24
Editing Factors:11 (bCCP1, EMP21, FLO22, GRP23, ORRM2, ORRM4, PCW1, PPR78, PPR_78, RIP1b, SMK4)
Editing Types:
C-to-U (472)
U-to-C (8)
Editing Sites: 532 (C-to-U: 472   NA: 52   U-to-C: 8)
External Link: NCBI Gene
Species Organelle Editing Sites Editing Types Genomic Position Region Strand Type Codons Amino Acid
Asclepias syriacaMitochondrion2
NA: 2
325552-326277
327233-328084
CDS
CDS
+
+
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Brassica napusMitochondrion1
C-to-U: 1
185529CDS-C-to-UCCC=>CUCP=>L
Carica papayaMitochondrion1
NA: 1
191125-192708CDS-NANA=>NANA=>NA
Citrullus lanatusMitochondrion18
C-to-U: 18
11
1728
2004
2046
2153
2241
2246
2369
2372
2400
242
254
443
452
515
551
590
668
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CYG
UCC=>UUC
UCC=>UUC
CCG=>CUG
CAC=>UAC
CCG=>CUG
CUC=>UUC
CGU=>UGU
CGU=>UGU
UCA=>UUA
UCU=>UUU
UCU=>UUU
UCA=>UUA
UCU=>UUU
UCC=>UUC
UCA=>UUA
CCA=>CUA
UCU=>UUU
P=>P/L
S=>F
S=>F
P=>L
H=>Y
P=>L
L=>F
R=>C
R=>C
S=>L
S=>F
S=>F
S=>L
S=>F
S=>F
S=>L
P=>L
S=>F
Cucumis sativusMitochondrion2
NA: 2
1-726
1735-2592
CDS
CDS
+
+
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cucurbita pepoMitochondrion18
C-to-U: 18
1079
1186
1274
1279
1402
1405
1433
242
254
443
452
515
551
590
668
715
746
761
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
CAC=>UAC
CCG=>CUG
CUC=>UUC
CGU=>UGU
CGU=>UGU
UCA=>UYA
UCU=>UUU
UCU=>UUU
UCA=>UUA
UCU=>UUU
UCC=>UUC
UCA=>UUA
CCA=>CUA
UCU=>UUU
CGG=>UGG
CCC=>CUC
UCC=>UUC
P=>L
H=>Y
P=>L
L=>F
R=>C
R=>C
S=>S/L
S=>F
S=>F
S=>L
S=>F
S=>F
S=>L
P=>L
S=>F
R=>W
P=>L
S=>F
Cycas taitungensisMitochondrion1
C-to-U: 1
155293CDS-C-to-UACG=>AUGT=>M
Ginkgo bilobaMitochondrion1
C-to-U: 1
50971CDS-C-to-UGCA=>GUAA=>V
Hyoscyamus nigerMitochondrion1
C-to-U: 1
23449CDS+C-to-UACG=>AUGT=>M
Liriodendron tulipiferaMitochondrion1
NA: 1
328527-330110CDS+NANA=>NANA=>NA
Lotus japonicusMitochondrion18
C-to-U: 18
1079
11
1186
1402
1405
1433
15
242
254
443
452
515
551
590
668
715
746
761
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
CCG=>CUG
CAC=>UAC
CGU=>UGU
CGU=>UGU
UCA=>UUA
GUC=>GUU
UCU=>UUU
UCU=>UUU
UCA=>UUA
UCU=>UUU
UCC=>UUC
UCA=>UUA
CCA=>CUA
UCU=>UUU
CGG=>UGG
CCC=>CUC
UCC=>UUC
P=>L
P=>L
H=>Y
R=>C
R=>C
S=>L
V=>V
S=>F
S=>F
S=>L
S=>F
S=>F
S=>L
P=>L
S=>F
R=>W
P=>L
S=>F
Millettia pinnataMitochondrion18
C-to-U: 18
1079
11
1186
1402
1405
1433
15
242
254
443
452
515
551
590
668
715
746
761
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
CCG=>CUG
CAC=>UAC
CGU=>UGU
CGU=>UGU
UCA=>UUA
GUC=>GUU
UCU=>UUU
UCU=>UUU
UCA=>UUA
UCU=>UUU
UCC=>UUC
UCA=>UUA
CCA=>CUA
UCU=>UUU
CGG=>UGG
CCC=>CUC
UCC=>UUC
P=>L
P=>L
H=>Y
R=>C
R=>C
S=>L
V=>V
S=>F
S=>F
S=>L
S=>F
S=>F
S=>L
P=>L
S=>F
R=>W
P=>L
S=>F
Nelumbo nuciferaMitochondrion16
C-to-U: 15
U-to-C: 1
197099-198682
197184
197194
197250
197278
197281
197404
197409
197424
198401
198486
198487
198586
198668
198672
198681
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
NA=>AUG
CCG=>CUG
CCA=>UCA
UCA=>UUA
CGU=>UGU
CGU=>UGU
CUC=>UUC
CCG=>CUG
UCU=>UUU
GAC=>GAU
CCU=>CUU
CCU=>UCU
UGC=>CGC
GUC=>GUU
CCG=>CUG
ACG=>AUG
NA=>M
P=>L
P=>S
S=>L
R=>C
R=>C
L=>F
P=>L
S=>F
D=>D
P=>L
P=>S
C=>R
V=>V
P=>L
U=>M
Nicotiana attenuataMitochondrion1
C-to-U: 1
168606CDS+C-to-UACG=>AUGT=>M
Nothoceros aenigmaticusMitochondrion5
NA: 4
U-to-C: 1
103159-103264
106123-106166
94796-95066
94885
99320-100467
CDS
CDS
CDS
NA
CDS
-
-
-
+
-
NA
NA
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ophioglossum californicumMitochondrion36
C-to-U: 36
170399
170498
170521
170522
170542
170567
170627
170633
170650
170651
170746
170756
170759
170765
170882
170894
170907
171107
171185
171208
171216
171218
171221
171341
171356
171412
171446
171479
171734
171782
171869
171873
171957
171958
171959
171960
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
5'UTR
5'UTR
5'UTR
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
UUC=>UUU
UCC=>UUC
UCC=>UCU
UCG=>UUG
CCU=>CUU
CCA=>CUA
UUC=>UUU
UCC=>UUC
UUC=>UUU
UCU=>UUU
UCA=>UUA
UCU=>UUU
UCC=>UUC
UCU=>UUU
CUU=>UUU
ACG=>AUG
UCA=>UUA
UUC=>UUU
CGG=>UGG
UCU=>UUU
CCC=>CUC
UCA=>UUA
UCA=>UUA
AAC=>AAU
UCA=>UUA
UCU=>UUU
UCU=>UUU
CCU=>CUU
UCA=>UUA
CAU=>UAU
NA=>NA
NA=>NA
NA=>NA
NA=>NA
S=>F
S=>L
F=>F
S=>F
S=>S
S=>L
P=>L
P=>L
F=>F
S=>F
F=>F
S=>F
S=>L
S=>F
S=>F
S=>F
L=>F
T=>M
S=>L
F=>F
R=>W
S=>F
P=>L
S=>L
S=>L
N=>N
S=>L
S=>F
S=>F
P=>L
S=>L
H=>Y
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Oryza sativa Japonica GroupMitochondrion4
C-to-U: 4
339974
339977
340005
340061
CDS
CDS
CDS
CDS
+
+
+
+
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCG=>UUG
UUC=>UUU
UCC=>UUC
S=>L
S=>L
F=>F
S=>F
Phaeoceros laevisMitochondrion6
NA: 4
U-to-C: 2
162724-162994
167253-168400
168253
171147-171252
171164
174217-174260
CDS
CDS
NA
CDS
NA
CDS
-
-
+
-
+
-
NA
NA
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phlegmariurus squarrosusMitochondrion4
NA: 4
171578-172027
175622-175775
178654-179325
182233-182555
CDS
CDS
CDS
CDS
-
-
-
-
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Psilotum nudumMitochondrion44
C-to-U: 43
U-to-C: 1
260031
260241
260307
260394
260445
260454
260457
260540
260544
260555
260561
260576
260696
260730
260760
3137
3497
3500
3502
3509
3526
3533
3538
3539
3580
3621
3653
3683
3687
3830
3864
3907
3911
3923
3935
3936
3972
3973
3979
4192
4197
4199
4200
4420
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
Intron
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
3'UTR
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
ACG=>AUG
UCA=>UUA
CCU=>CUU
CCA=>CUA
UCC=>UUC
UCU=>UUU
UGA=>CGA
UCG=>UUG
CCC=>UCC
CGG=>UGG
CCG=>UCG
CUU=>UUU
CCA=>CUA
UCU=>UUU
NA=>NA
CCC=>CUC
UCU=>UUU
CGG=>UGG
UCC=>UUC
CAU=>UAU
CCA=>CUA
CCG=>UCG
UCG=>UUG
CCA=>UCA
GCC=>GCU
GCG=>GUG
UCA=>UUA
GAC=>GAU
UCC=>UUC
GUC=>GUU
CAU=>UAU
GCG=>GUG
UCC=>UUC
CCC=>CUC
CUC=>CUU
UUC=>UUU
CAC=>UAC
CGG=>UGG
CGU=>UGU
UUC=>UUU
UCC=>UUC
UUC=>UUU
NA=>NA
NA=>NA
T=>M
S=>L
P=>L
P=>L
S=>F
S=>F
TERM=>R
S=>L
P=>S
R=>W
P=>S
L=>F
P=>L
S=>F
NA=>NA
P=>L
S=>F
R=>W
S=>F
H=>Y
P=>L
P=>S
S=>L
P=>S
A=>A
A=>V
S=>L
D=>D
S=>F
V=>V
H=>Y
A=>V
S=>F
P=>L
L=>L
F=>F
H=>Y
R=>W
R=>C
F=>F
S=>F
F=>F
NA=>NA
Rhazya strictaMitochondrion18
C-to-U: 18
405818
405822
406049
406061
406250
406259
406322
406358
406397
406475
406522
406568
406844
406993
407212
407240
407296
407306
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
GUC=>GUU
UCU=>UUU
UCU=>UUU
UCA=>UUA
UCU=>UUU
UCC=>UUC
UCA=>UUA
CCA=>CUA
UCU=>UUU
CGG=>UGG
UCC=>UUC
UCC=>UUC
CAC=>UAC
CGU=>UGU
UCA=>UUA
CCA=>UCA
CCG=>CUG
P=>L
V=>V
S=>F
S=>F
S=>L
S=>F
S=>F
S=>L
P=>L
S=>F
R=>W
S=>F
S=>F
H=>Y
R=>C
S=>L
P=>S
P=>L
Solanum lycopersicumMitochondrion1
NA: 1
315388-316971CDS+NANA=>NANA=>NA
Solanum pennelliiMitochondrion1
NA: 1
8832-10415CDS+NANA=>NANA=>NA
Species Organelle Editing Sites Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Sep 2026 (version 2.0)