PpPPR_77 - Plant Editosome Database - BIG Data Center
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- PpPPR_77
Summary
| Editing Factor: |
PpPPR_77 |
| Synonym: |
Phypa_191892 |
| Description: |
Encoding a PPR-DYW protein involved in RNA editing |
| Protein Family: |
PPR
|
| Subclass: |
DYW
|
| Construct Structure: |
PLS-E/E+-DYW
|
| Gene ID & Species: |
PP00169G00580 (Physcomitrium patens)
|
| Edited Gene(s): |
cox2 cox3
|
| Editing Type(s): |
C-to-U (6)
|
| Publication(s): |
[1] Targeted gene disruption identifies three PPR-DYW proteins involved in RNA editing for five editing sites of the moss mitochondrial transcripts., Plant & cell physiology, 2010. [PMID=20837503]
|
Editing Details
| Species |
Gene ID |
Organelle |
Edited Gene |
Position |
Region |
Editing Type |
Codon |
Amino Acid |
Molecular Effect |
Experiment Details |
| Physcomitrium patens |
PP00169G00580 |
Mitochondrion |
cox2
|
370 |
CDS |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | △77-16 | The Nptii Gene Cassette | Restriction sites - Xhoi | Knockout | Severe growth retardation | Protonema | 3 days | Direct Sequencing of PCR Products | 0.00% | Unedited | Absent | 20837503 | | NA | △77-7 | The Nptii Gene Cassette | Restriction sites - Xhoi | Knockout | Severe growth retardation | Protonema | 3 days | Direct Sequencing of PCR Products | 0.00% | Unedited | Absent | 20837503 | | NA | WT | Control | Control | Control | Normal | Protonema | 3 days | Direct Sequencing of PCR Products | 100.00% | Complete | None | 20837503 |
|
| Physcomitrium patens |
PP00169G00580 |
Mitochondrion |
cox3
|
733 |
CDS |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | △77-16 | The Nptii Gene Cassette | Restriction sites - Xhoi | Knockout | Severe growth retardation | Protonema | 3 days | Direct Sequencing of PCR Products | 0.00% | Unedited | Absent | 20837503 | | NA | △77-7 | The Nptii Gene Cassette | Restriction sites - Xhoi | Knockout | Severe growth retardation | Protonema | 3 days | Direct Sequencing of PCR Products | 0.00% | Unedited | Absent | 20837503 | | NA | WT | Control | Control | Control | Normal | Protonema | 3 days | Direct Sequencing of PCR Products | 100.00% | Complete | None | 20837503 |
|
Last update: Jul 2021
(version 1.0)