YSS3 - Plant Editosome Database

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Position Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Oryza sativa

Os08g0139100

Chloroplast

atpA

1148

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	73.00%	High	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	50.00%	Medium	Decreased	NONE

Oryza sativa

Os08g0139100

Chloroplast

ndhB

1317

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	70.00%	High	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	41.00%	Medium	Decreased	NONE

Oryza sativa

Os08g0139100

Chloroplast

ndhB

737

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	100.00%	Complete	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	43.00%	Medium	Decreased	NONE

Oryza sativa

Os08g0139100

Chloroplast

ndhD

878

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	85.00%	High	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	50.00%	Medium	Decreased	NONE

Oryza sativa

Os08g0139100

Chloroplast

ndhG

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	58.00%	Medium	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	30.00%	Low	Decreased	NONE

Oryza sativa

Os08g0139100

Chloroplast

rpoB

467

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	70.00%	High	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	11.00%	Poor	Decreased	NONE

Oryza sativa

Os08g0139100

Chloroplast

rpoB

545

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	70.00%	High	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	10.00%	Poor	Decreased	NONE

Oryza sativa

Os08g0139100

Chloroplast

rpoB

560

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	75.00%	High	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	63.00%	High	Decreased	NONE

Oryza sativa

Os08g0139100

Chloroplast

rps14

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	59.00%	Medium	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	19.00%	Poor	Decreased	NONE

Oryza sativa

Os08g0139100

Chloroplast

rps8

182

CDS

Gramene ('93-11' and Nipponbare)

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	WT	Wild type	No treatment	No mutant	Normal	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	73.00%	High	None	NONE
Ningjing 3 (W006)	yss3	NA	NA	Recessive	A distinct white stripe phenotype at the seedling stage accompanied by severe defects in chloroplast development	Leaf	Three-leaf stage	The RT-PCR products were sequenced directly	63.00%	High	Decreased	NONE

Editing Factor:	YSS3
Synonym:	Young Seedling Stripe 3
Description:	The yss3 mutant displays widespread defects in chloroplast RNA editing and in the splicing of multiple chloroplast group II introns
Protein Family:	Multiple organellar RNA editin
Subclass:	NA
Physical Interaction:	OsDYW2; OsCLB19; OsSLA4; OsTHA8; OsYSA
Construct Structure:	MORF
Gene ID & Species:	Os08g0139100 (Oryza sativa)
Edited Gene(s):	atpA ndhB ndhG ndhD rpoB rps8 rps14
Editing Type(s):	C-to-U (20)
Publication(s):	NA

Summary

Editing Details