| 项目编号 |
PRJCA007961 |
| 项目标题 |
Genomic DNA Contamination in RNA-seq |
| 涉及领域 |
Medical |
| 数据类型 |
Transcriptome or Gene expression
Raw sequence reads
|
| 物种名称 |
Homo sapiens
|
| 描述信息 |
Genomic DNA (gDNA) contamination exists in gene quantification technologies, yet the RNA-seq studies put little attention on it. gDNA contamination would lead to false results, however, the impacts of gDNA contamination for RNA-seq were still unknown. To find out the impacts of gDNA on gene expression in RNA-seq, we designed an RNA-seq experiment adding different concentrations of gDNA to extracted total RNA. |
| 样品范围 |
Monoisolate |
| 发布日期 |
2022-08-05 |
| 出版信息 |
| PubMed ID |
文章标题 |
杂志名称 |
Doi |
发表年份 |
| 35922750
|
Genes expressed at low levels raise false discovery rates in RNA samples contaminated with genomic DNA
|
BMC Genomics
|
10.1186/s12864-022-08785-1
|
2022
|
| 39189209
|
CleanUpRNAseq: An R/Bioconductor Package for Detecting and Correcting DNA Contamination in RNA-Seq Data
|
BioTech
|
10.3390/biotech13030030
|
2024
|
|
|
| 项目资金来源 |
| 机构 |
项目类型 |
授权项目ID |
授权项目名称 |
| No funding support
|
|
|
|
|
|
| 提交者 |
Ying
Yu (ying_yu@fudan.edu.cn)
|
| 提交单位 |
Fudan University |
| 提交日期 |
2022-01-14 |
