Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

SoyDB

General information

URL: http://casp.rnet.missouri.edu/soydb
Full name: soybean transcription factor database
Description: SoyDB contains protein sequences, predicted tertiary structures, putative DNA binding sites, domains, homologous templates in the Protein Data Bank (PDB),
Year founded: 2010
Last update:
Version:
Accessibility:
Unaccessible
Country/Region: United States

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Missouri
Address:
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Jianlin Cheng
Contact email (PI/Helpdesk): chengji@missouri.edu

Publications

Ranking

All databases:
1983/6275 (68.414%)
Expression:
410/1213 (66.282%)
1983
Total Rank
63
Citations
4.5
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Created with Highcharts 10.0.0soybeantranscriptiondatabaseSoyDBproteinfactorssequenceknowledgewebfamilyfactorgenesaidgenomeputativesequencescanannotatedcomprehensivepubliclySoyDB:BACKGROUND:TranscriptionplaycrucialruleregulatinggeneexpressioninfluencealmostbiologicalprocessesSystematicallyidentifyingannotatinggreatlyunderstandingfunctionsmechanismsarticlepresentuserfriendlycontainingfactors.DESCRIPTION:recentlysequencedDepartmentEnergy-JointGenomeInstituteDOE-JGIavailableMiningidentified5671comprehensivelyresearchcommunitydeveloped-containspredictedtertiarystructuresDNAbindingsitesdomainshomologoustemplatesProteinDataBankPDBclassificationsmultiplealignmentsconsensusmotifslogolinksPlantTFDBknownESTgeneraldatabasesincludingSwiss-ProtGeneOntologyKEGGEMBLTAIRInterProSMART

Record metadata

Created on: 2018-01-29
Curated by:
Yang Zhang [2018-02-23]