Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

PathoPhenoDB

General information

URL: http://patho.phenomebrowser.net
Full name: A database of pathogens and their phenotypes for diagnostic support in infections
Description: PathoPhenoDB aims to support diagnosis of infectious diseases caused by known pathogens. The database relies on the pathogen-to-phenotype associations. Pathogen-disease relations are linked to disease-phenotypes by using text mining methods.
Year founded: 2019
Last update:
Version:
Accessibility:
Accessible
Country/Region: Saudi Arabia

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: King Abdullah University of Science and Technology
Address: Computer, Electrical and Mathematical Sciences & Engineering with Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia
City:
Province/State:
Country/Region: Saudi Arabia
Contact name (PI/Team): Hoehndorf R
Contact email (PI/Helpdesk): robert.hoehndorf@kaust.edu.sa

Publications

Ranking

All databases:
3783/6275 (39.729%)
Genotype phenotype and variation:
555/898 (38.307%)
3783
Total Rank
8
Citations
1.6
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Created with Highcharts 10.0.0PathoPhenoDBdiseaseinfectiousinformationagentsupportresearchmanualcurationphenotypesmechanismslinkinghumanpathogensUnderstandingrelationshippathophysiologybiologycausativedevelopmenttherapeuticdiagnosticapproachesdependentsynthesiswiderangetypesProvisioncomprehensiveintegratedphenotypeknowledgebasepotentialprovidenovelorthogonalsourcesunderstandingpathogenesisdevelopeddatabasecontainingpathogen-to-phenotypeassociationsreliespathogen-diseaserelationsontology-basedtextminingwellassociatehostagentsUsingSemanticWebtechnologiesalsolinksknowledgedrugresistancedrugsusedtreatmentdiseasesaccessiblehttp://patho.phenomebrowser.net/datafreelyavailablepublicSPARQLendpoint.

Related Databases

Citing
Cited by

Record metadata

Created on: 2019-10-26
Curated by:
irfan Hussain [2019-11-19]
Amjad Ali [2019-10-26]