Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/CHN/SH-xh0906-9_S9/2023 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds.
Seq-submit ::= {
sub {
contact {
contact {
name name {
last "Zhang",
first "Wanju",
middle "",
initials "",
suffix "",
title ""
},
affil std {
affil "Shanghai Municipal Center for Disease Control & Prevention",
div "Microbe lab",
city "Shanghai",
country "China",
street "west zhongshan road 1380",
email "zhangwanju@scdc.sh.cn",
postal-code "200336"
}
}
},
cit {
authors {
names std {
{
name name {
last "Zhang",
first "Wanju",
initials "W."
}
}
},
affil std {
affil "Shanghai Municipal Center for Disease Control & Prevention",
div "Microbe lab",
city "Shanghai",
country "China",
street "west zhongshan road 1380",
postal-code "200336"
}
},
date std {
year 2023,
month 9,
day 19
}
},
subtype new,
tool "table2asn 1.26.678"
},
data entrys {
set {
class genbank,
seq-set {
set {
class nuc-prot,
descr {
source {
org {
taxname "Severe acute respiratory syndrome coronavirus 2",
orgname {
mod {
{
subtype isolate,
subname "SARS-CoV-2/human/CHN/SH-xh0906-9_S9/2023"
},
{
subtype nat-host,
subname "Homo sapiens; Host_age: 68; Host_sex: Female"
}
},
gcode 1
}
},
subtype {
{
subtype country,
name "China:Shanghai"
},
{
subtype isolation-source,
name "Nasopharyngeal swab"
},
{
subtype collection-date,
name "2023-09-02"
},
{
subtype other,
name "Passage_details/history: Original"
}
}
},
user {
type str "StructuredComment",
data {
{
label str "StructuredCommentPrefix",
data str "##Genome-Assembly-Data-START##"
},
{
label str "Assembly Method",
data str "Consensus sequence method v. 940-000133-00"
},
{
label str "Sequencing Technology",
data str "MGISEQ-200"
},
{
label str "StructuredCommentSuffix",
data str "##Genome-Assembly-Data-END##"
}
}
},
create-date std {
year 2023,
month 9,
day 19
}
},
seq-set {
seq {
id {
genbank { accession "C_AA044686", version 1}, gi 0670650650446861
},
descr {
user {
class "1.0",
type str "AutodefOptions",
data {
{label str "UseLabels",data bool TRUE },
{label str "LeaveParenthetical",data bool TRUE},
{label str "SpecifyNuclearProduct",data bool TRUE},
{label str "MaxMods",data int 0},
{label str "FeatureListType",data str "List All Features"},
{label str "MiscFeatRule",data str "Delete"},
{label str "HIVRule",data str "WantBoth"},
{label str "ModifierList",
data fields { {label str "OrgMods",num 1,
data strs {"isolate" }}}}}},
molinfo {
biomol genomic
},
user {
type str "Submission",
data {
{
label str "AdditionalComment",
data str "GenBase"
}
}
}
},
inst {
repr raw,
mol rna,
length 29754,
topology linear,
strand ss,
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F48D74BFC4F41D38FEF7C5FDFF50EF1FAF539CC4EDDEA143AC708AFE305795C53F0E3AEFCFF9F5
1E20B704C308A7A3FFAC71FC8F60854B571F3EF0C19C70EFBCF02DEE0FD0FFB0E353FFA3BF1400
04100BE8E80B8BD22FCF72E60C3E47FE0CEDDD25FF7CE85F828022AC3F400DF2A0FEEFC20CF8EB
CFF00CCF70911973C3F226E37574ABFF69FC814FAC8FE50CACF04D1CAFD01FC7E7F1320BCFE1D7
BE3DF7D2BE849EB9E49F3CEEAF37D05CA1FF73C0330E00E814F1239EC87B91F8577748040BB1BE
035FC7B20028373407DC1FC8B505048373EF23F5C33C407EE57FD382FFC194513F937BF39FA04A
08834907BBE78F3DED3330FD914FFD9FF0BBCE8BB75C703C0E3779FC70EDCE48F4FEC3C8AC382D
25036752A407A033E78F30F303C5238FF129E6F327E83DC109F8F70972EB0F30F17B323FF0A0B7
09D017FE22233F41E03734A5AC1017EC3AEF92B5C3EF1DD7F10D33AFD6151F3AEFAD1414C48B2C
B1FDFF81F713914907BFBA17002DC70FEBC0040EED0FD07D0EBF04A44AEF7C78B70400BF797F50
43FA4884F9E11C78E7B5B8D44847E23DF84F114EF7FEBAED2EF3045281031F7052BE7BDFCD2AEF
079120B57BE73D392341F1D71FA6EFCF712BDC3BFF4046E4A7BF0CAA7833B41074CE2EE13153EB
92B3399CBCD21D21C2DD369A91B2EC9CB43534F9711CED1FAE4803D2F9F1DC30773E5315103FC7
3CBBC51203DC52EDCE142134B23EC43B13FBAE3D078392437FEF90CE92FFEC443C01B9FC1E8327
BE042100115082FFE442D0103F10045143C0CFFAEBFC3FF440CF148D4D0050908AD3F3E08DC7FD
040B847E48E7A7D340433AE3E5FAE33E79C885D3FB9100BF0697C7BFE517F9D12380E3E74311F7
91EF26AC4347DEBE85FEB92B9E4F10314FE73903A7CCAFC3ACFA2F1120EF773881400F8F94143F
0CB9CFA403D08747F7D4490B91FA007D08EEB414C39109FC0467EF0107C9D40FEB90FD0BBFC0E3
35FD1B7E102F8A782E40F8CAF8D12921F40BF92133B87410F0F2279203489F79C37E79C700ED22
EEC7E8434008BE3FFBA02A734DF3B5F574349174EBB2DF7E4EE1F3B5791080207D1079D794FED3
8E802447F5DB82BB7FBF40E9111EBFB0440A0FFCE051034F1C484113FBB7AC1EE3BEC3283ED041
12FCE35FE41783C8F4F428A2F23033FC20D3134523BE3F2B84DDE93C39F4BEC04F40080F859743
8AF9420FC0E0DDD36375081FA02CE24B3300E94EB13FA72BFCC9E9F8F94CB0EB843CE7F9ECE14B
E7B2FB742A7BEF7EE8D79E40FE3821877894B9D028B40F13C44C0607CE8FEFCE20DFC43E81EC1F
E090AE03428E71D7D23FEF6671E418C58C425D1D5FDA3A7CFBE9BE47DF9EFFD2267DC034C1DD00
223A41C91DD42AEF47FBF907E7BEFBFB04BF1D117FE76F9E7A5F8255FF7737F39FCB71F7E48B30
1FEC20C30E29FE9FE7A0396F500153C7F38E5073FDFE7A4C70FBC61CFB317C432EC1F7D0FB4F1F
4AE3A4410B5CFDE04E1C523EBAF31E003A837A2C021EEFB3C44BC7D1F4873C527B1D0743E2C484
FAEF813BC5F7D3710C03EF8E25E0813B503D110D86BD35A2FBC352C3A050FCE38161861C726E5F
EC244278E2C607CEC74F6FDA088CAE6F0CBC326C7DFFDF9FDBACF7E72F11C94D7C799F63EEE6C7
9E433EF06E2DFB005F7FF1BF1DDBBC00DE0F7DC8BD78DF7ADC0607033CCF2FFDEFE81FC3FC94E9
23D41AC73C5BE089F00275F820E8172C32BF5CF5F13A3FB7DC43F9739412832BFFB330F0BC3FD7
7A7BCE94B07F07EFFB9F9E7BF120C0FA345AE83E73643A7EDFB29F8EE9D271F4F9F7F487BF99B1
9BD4EEB4FC35201C13DF741B94753A473DE14859F7202E076C3689EE35F6E84DF6CF9E84537286
7B84D0A1797020347BE71346067F7CF103EA27D926EC92B874AFF9E4C4B67128FA41CC0F011214
F52C92E10CF9FE7EC4B0B84123BF4DFBE1FD2BC732488CF1C3CF39A1FF02FD4FE837E3C4D30174
C3C00FCDC2D1C1E20C0CF743C8E089050E88F7701813803CF7FDFA478C11D9C7EE27F3471422EE
F22B104B1FF00817E77DE91318A90F453F4D77278C103F91E1F9FC91D0FE7FE7ED7869B0046DCD
2F1B948D2FD1701EF4D2108A0BD081FC7750FFDF3EF9A432EFCC11FE7D11D008084838F81FD3C3
E1F73FB9FFC97F7BCF5FBFC3CE7CF37FEBDD1F81E4234C3807ED1970181380FDFBFDF3834D107B
2793F45083B2FC4B4EC7413414CECBE3856ED73D1F73DC0EB33C8B289C8034917F0F83EE6E8E2B
EBDC0D153D2C4D8CDAC3CC4BF5EFC5FF10F0F94A05C0FAB2DFB2E6FBDBDCE087FF22CD386F6EFB
FC8FD37018101F03B78C3A154014980E47593C6FEBA15D23D07A4B0520EBAA66340106DA550AFC
5430C79B7EBD167747413A428217C0F57628429BD43C114324B5238503E9C716089C52183DBAEB
86B00E02374B508EB3F71C5CA07A94827A1F573AE704086934CEAF9078A897E0C45008D13E9159
0D79C10E790DB9C41F5D0A0413E500A7DC6482A248A692D0977DDBD74D1B2D904BD080F41D4A49
2C0607DD79C83A7A43A6B8E79DF9FE79E7E123E0527E22403B7AC0A50410429407B47080DE79E2
9F70825DA4006C7947024C43B04427F6921BAD4810150A03FEA85281C3484281E3C404FA5903E4
43F955267D26F7DA0ED993E93A0B445F6A06EBE17112B94D03E8E1023503F408D0B4FF9E0C24CF
864C4013D5141225C00A10020829E3807425F16488482012407B877DF5E7923FA38FDD4043E410
D4E25B9E1D074A5C074E485110A48EA73301BFD9FF5BF18CCCB71DFB920E0FF6C1C4C910B23B2F
07F0DD132437F0D2EEC13CA8A1F80894513FD1712E0439CA889E5CCE822570EEC03C3FCB2E7355
3B8FF0C9F7CA20'H
},
annot {
{
data ftable {
{
id local id 2,
data gene {
locus "ORF1ab"
},
location int {
from 211,
to 21491,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 1
},
{
id local id 3
}
}
},
{
id local id 5,
data gene {
locus "S"
},
location int {
from 21499,
to 25308,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 4
}
}
},
{
id local id 7,
data gene {
locus "ORF3a"
},
location int {
from 25317,
to 26144,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 6
}
}
},
{
id local id 9,
data gene {
locus "E"
},
location int {
from 26169,
to 26396,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 8
}
}
},
{
id local id 11,
data gene {
locus "M"
},
location int {
from 26447,
to 27115,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 10
}
}
},
{
id local id 13,
data gene {
locus "ORF6"
},
location int {
from 27126,
to 27311,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 12
}
}
},
{
id local id 15,
data gene {
locus "ORF7a"
},
location int {
from 27318,
to 27683,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 14
}
}
},
{
id local id 17,
data gene {
locus "ORF7b"
},
location int {
from 27680,
to 27811,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 16
}
}
},
{
data gene {
locus "ORF8"
},
location int {
from 27818,
to 28183,
strand plus,
id gi 0670650650446861
}
},
{
id local id 19,
data gene {
locus "N"
},
location int {
from 28198,
to 29448,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 18
}
}
},
{
id local id 21,
data gene {
locus "ORF10"
},
location int {
from 29473,
to 29589,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 20
}
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus frameshifting stimulation element
stem-loop 1",
location int {
from 13412,
to 13439,
strand plus,
id gi 0670650650446861
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus frameshifting stimulation element
stem-loop 2",
location int {
from 13424,
to 13478,
strand plus,
id gi 0670650650446861
}
},
{
data imp {
key "misc_feature"
},
comment "similar to ORF8 protein",
location int {
from 27818,
to 28183,
strand plus,
id gi 0670650650446861
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus 3' UTR pseudoknot stem-loop 1",
location int {
from 29524,
to 29559,
strand plus,
id gi 0670650650446861
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus 3' UTR pseudoknot stem-loop 2",
location int {
from 29544,
to 29572,
strand plus,
id gi 0670650650446861
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus 3' stem-loop II-like motif (s2m)",
location int {
from 29643,
to 29657,
strand plus,
id gi 0670650650446861
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72498", version 1}, gi 067065065069724981
},
descr {
title "ORF1ab polyprotein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 7093,
seq-data iupacaa "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQ
HLRDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL
LRKNGNKGAGGHRYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLEC
IKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLN
SIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATT
CGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCN
HTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVT
KGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDL
ATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCA
KEIKESVQTFFKLVNKFLALCVDSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGET
LPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVT
FGDDTVIEVQGYKSVNIIFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSM
ATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL
DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYE
NFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF
ITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQ
EGVLTAVVIPTKKASGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGT
VSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTM
PLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE
FLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADV
TKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLT
LQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQT
TLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHSTFTCASEYTGNYQCGHYKH
ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVP
NQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHV
NNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVV
GDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVV
STTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN
IIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLET
IQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMY
IFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGS
TFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINV
IVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA
ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSA
RHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLI
KVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACP
LIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYNDFATSACVLAAECTIFKDASGKPV
PYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNN
DYYRSLPGVFCGVDAVNLFTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL
MSFIVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIVYIICISTKHFYWFFSNYLKRR
VVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPFTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFS
NSGSDVLYQPPQISITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDL
LIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRHNFT
IKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVI
NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEF
TPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHK
HAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMN
VLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCT
CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTS
VVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASE
FSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKV
TSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVD
ADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTIKGGRFV
LALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATE
VPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP
NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNRVCGVSAARLTPCG
TGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDNNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDF
FKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLG
ERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHV
DTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPLTSFGPLVRKIFV
DGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPG
NFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINAN
QVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNR
QFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCS
LSHRFYRLANECAQVLSEMVMCGSSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH
RLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET
DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVF
HLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQAVGACVLCNSQTSLRCGACIRRPFLCC
KCCYDHVIPTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTD
FNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFT
GYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDE
FSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR
VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLCAKHYVYIGDPAQLPAPRTLLTKGTL
EPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGV
VREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGIL
CIMSDRDLYDKLQFTSLEIPRRNVATLQAENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDVPGIPKDMT
YRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREAVGTNLPLQLGFSTGVNLVAVPTGYVDTP
NNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVKIGPERT
CCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHE
CFVKRVDWTIEYPIIGDELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYK
IEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCRFDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLK
QLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNMMISAGFSLWVYKQFDTYN
LWNTFTRLQSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEV
KILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPIETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGS
VKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERY
KLEGYAFEHIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFV
EIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQSSQAWQPGVAMPNLYKMQRMLLEKCDLQNYGDSAT
LPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIG
DCATVHTANKWDLIISDMYDPKTKNVTKENDSKEGFFTYICGFIQQKLALGGSVAIKITEHSWNADLYKLMGHFAWWT
AFVTNVNASSSEAFLIGCNYLGKPREQIDGYVMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLKEGQIND
MILSLLSKGRLIIRENNRVVISSDVLVNN"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF1ab polyprotein"
}
},
location int {
from 0,
to 7092,
id gi 067065065069724981
}
},
{
data prot {
name {
"leader protein"
},
processed mature
},
location int {
from 0,
to 179,
id gi 067065065069724981
}
},
{
data prot {
name {
"nsp2"
},
processed mature
},
location int {
from 180,
to 817,
id gi 067065065069724981
}
},
{
data prot {
name {
"nsp3"
},
processed mature
},
location int {
from 818,
to 2762,
id gi 067065065069724981
}
},
{
data prot {
name {
"nsp4"
},
processed mature
},
location int {
from 2763,
to 3262,
id gi 067065065069724981
}
},
{
data prot {
name {
"3C-like proteinase"
},
processed mature
},
location int {
from 3263,
to 3568,
id gi 067065065069724981
}
},
{
data prot {
name {
"nsp6"
},
processed mature
},
location int {
from 3569,
to 3855,
id gi 067065065069724981
}
},
{
data prot {
name {
"nsp7"
},
processed mature
},
location int {
from 3856,
to 3938,
id gi 067065065069724981
}
},
{
data prot {
name {
"nsp8"
},
processed mature
},
location int {
from 3939,
to 4136,
id gi 067065065069724981
}
},
{
data prot {
name {
"nsp9"
},
processed mature
},
location int {
from 4137,
to 4249,
id gi 067065065069724981
}
},
{
data prot {
name {
"nsp10"
},
processed mature
},
location int {
from 4250,
to 4388,
id gi 067065065069724981
}
},
{
data prot {
name {
"RNA-dependent RNA polymerase"
},
processed mature
},
location int {
from 4389,
to 5320,
id gi 067065065069724981
}
},
{
data prot {
name {
"helicase"
},
processed mature
},
location int {
from 5321,
to 5921,
id gi 067065065069724981
}
},
{
data prot {
name {
"3'-to-5' exonuclease"
},
processed mature
},
location int {
from 5922,
to 6448,
id gi 067065065069724981
}
},
{
data prot {
name {
"endoRNAse"
},
processed mature
},
location int {
from 6449,
to 6794,
id gi 067065065069724981
}
},
{
data prot {
name {
"2'-O-ribose methyltransferase"
},
processed mature
},
location int {
from 6795,
to 7092,
id gi 067065065069724981
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72501", version 1}, gi 067065065069725011
},
descr {
title "ORF1a polyprotein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 4402,
seq-data iupacaa "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQ
HLRDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL
LRKNGNKGAGGHRYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLEC
IKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLN
SIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATT
CGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCN
HTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVT
KGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDL
ATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCA
KEIKESVQTFFKLVNKFLALCVDSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGET
LPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVT
FGDDTVIEVQGYKSVNIIFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSM
ATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL
DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYE
NFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF
ITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQ
EGVLTAVVIPTKKASGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGT
VSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTM
PLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE
FLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADV
TKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLT
LQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQT
TLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHSTFTCASEYTGNYQCGHYKH
ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVP
NQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHV
NNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVV
GDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVV
STTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN
IIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLET
IQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMY
IFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGS
TFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINV
IVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA
ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSA
RHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLI
KVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACP
LIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYNDFATSACVLAAECTIFKDASGKPV
PYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNN
DYYRSLPGVFCGVDAVNLFTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL
MSFIVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIVYIICISTKHFYWFFSNYLKRR
VVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPFTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFS
NSGSDVLYQPPQISITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDL
LIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRHNFT
IKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVI
NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEF
TPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHK
HAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMN
VLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCT
CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTS
VVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASE
FSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKV
TSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVD
ADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTIKGGRFV
LALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATE
VPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP
NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF1a polyprotein"
}
},
location int {
from 0,
to 4401,
id gi 067065065069725011
}
},
{
data prot {
name {
"leader protein"
},
processed mature
},
location int {
from 0,
to 179,
id gi 067065065069725011
}
},
{
data prot {
name {
"nsp2"
},
processed mature
},
location int {
from 180,
to 817,
id gi 067065065069725011
}
},
{
data prot {
name {
"nsp3"
},
processed mature
},
location int {
from 818,
to 2762,
id gi 067065065069725011
}
},
{
data prot {
name {
"nsp4"
},
processed mature
},
location int {
from 2763,
to 3262,
id gi 067065065069725011
}
},
{
data prot {
name {
"3C-like proteinase"
},
processed mature
},
location int {
from 3263,
to 3568,
id gi 067065065069725011
}
},
{
data prot {
name {
"nsp6"
},
processed mature
},
location int {
from 3569,
to 3855,
id gi 067065065069725011
}
},
{
data prot {
name {
"nsp7"
},
processed mature
},
location int {
from 3856,
to 3938,
id gi 067065065069725011
}
},
{
data prot {
name {
"nsp8"
},
processed mature
},
location int {
from 3939,
to 4136,
id gi 067065065069725011
}
},
{
data prot {
name {
"nsp9"
},
processed mature
},
location int {
from 4137,
to 4249,
id gi 067065065069725011
}
},
{
data prot {
name {
"nsp10"
},
processed mature
},
location int {
from 4250,
to 4388,
id gi 067065065069725011
}
},
{
data prot {
name {
"nsp11"
},
processed mature
},
location int {
from 4389,
to 4401,
id gi 067065065069725011
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72502", version 1}, gi 067065065069725021
},
descr {
title "surface glycoprotein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 1269,
seq-data iupacaa "MFVFLVLLPLVSSQCVNLITRTQSYTNSFTRGVYYPDKVFRSSV
LHSTHDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPALPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATN
VVIKVCEFQFCNDPFLDVYQKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKEGNFKNLREFVFKNIDGYFKIY
SKHTPINLERDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPVDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN
GTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFHEVFNATTFASVYAWNRKRISN
CVADYSVIYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNS
NKLDSKPSGNYNYLYRFLRKSKLKPFERDISTEIYQAGNKPCNGVAGPNCYSPLQSYGFRPTYGVGHQPYRVVVLSFE
LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGG
VSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICA
SYQTQTKSHRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECS
NLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTL
ADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRF
NGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRL
DKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVF
LHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP
LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL
GFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT"
},
annot {
{
data ftable {
{
data prot {
name {
"surface glycoprotein"
}
},
location int {
from 0,
to 1268,
id gi 067065065069725021
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72503", version 1}, gi 067065065069725031
},
descr {
title "ORF3a protein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 275,
seq-data iupacaa "MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFG
WLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVR
IIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDC
VVLHSYFTSDYYQLYSTQLSTDIGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF3a protein"
}
},
location int {
from 0,
to 274,
id gi 067065065069725031
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72504", version 1}, gi 067065065069725041
},
descr {
title "envelope protein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 75,
seq-data iupacaa "MYSFVSEEIGALIVNSVLLFLAFVVFLLVTLAILTALRLCAYCC
NIVNVSLVKPSFYVYSRVKNLNSSRVPDLLV"
},
annot {
{
data ftable {
{
data prot {
name {
"envelope protein"
}
},
location int {
from 0,
to 74,
id gi 067065065069725041
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72505", version 1}, gi 067065065069725051
},
descr {
title "membrane glycoprotein [Severe acute respiratory
syndrome coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 222,
seq-data iupacaa "MADSNGTITVEELKKLLEEWNLVIGFLFLTWICLLQFAYANRNR
FLYIIKLIFLWLLWPVTLTCFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV
PLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAYSRYR
IGNYKLNTDHSSSSDNIALLVQ"
},
annot {
{
data ftable {
{
data prot {
name {
"membrane glycoprotein"
}
},
location int {
from 0,
to 221,
id gi 067065065069725051
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72506", version 1}, gi 067065065069725061
},
descr {
title "ORF6 protein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 61,
seq-data iupacaa "MFHLVDFQVTIAEILLIIMRTFKVSIWNLDYIINLIIKNLSKSL
TENKYSQLDEEQPMEIL"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF6 protein"
}
},
location int {
from 0,
to 60,
id gi 067065065069725061
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72507", version 1}, gi 067065065069725071
},
descr {
title "ORF7a protein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 121,
seq-data iupacaa "MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNS
PFHPLADNKFALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKTE"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF7a protein"
}
},
location int {
from 0,
to 120,
id gi 067065065069725071
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72508", version 1}, gi 067065065069725081
},
descr {
title "ORF7b [Severe acute respiratory syndrome coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 43,
seq-data iupacaa "MIELSLIDFYLCFLAFLLFLVLIMLIIFWFSLELQDHNETCHA"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF7b"
}
},
location int {
from 0,
to 42,
id gi 067065065069725081
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72499", version 1}, gi 067065065069724991
},
descr {
title "nucleocapsid phosphoprotein [Severe acute respiratory
syndrome coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 416,
seq-data iupacaa "MSDNGPQNQRNALRITFGGPSDSTGSNQNGGARSKQRRPQGLPN
NTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGA
NKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSK
RTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQ
TQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA
YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSRADSTQA"
},
annot {
{
data ftable {
{
data prot {
name {
"nucleocapsid phosphoprotein"
}
},
location int {
from 0,
to 415,
id gi 067065065069724991
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAE72500", version 1}, gi 067065065069725001
},
descr {
title "ORF10 protein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 38,
seq-data iupacaa "MGYINVFAFPFTIYSLLLCRMNFRNYIAQVDVVNFNLT"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF10 protein"
}
},
location int {
from 0,
to 37,
id gi 067065065069725001
}
}
}
}
}
}
},
annot {
{
data ftable {
{
id local id 1,
data cdregion {
frame one,
code {
id 1
}
},
except TRUE,
product whole gi 067065065069724981,
location mix {
int {
from 211,
to 13404,
strand plus,
id gi 0670650650446861
},
int {
from 13404,
to 21491,
strand plus,
id gi 0670650650446861
}
},
xref {
{
id local id 2
}
},
except-text "ribosomal slippage"
},
{
id local id 3,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069725011,
location int {
from 211,
to 13419,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 2
}
}
},
{
id local id 4,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069725021,
location int {
from 21499,
to 25308,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 5
}
}
},
{
id local id 6,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069725031,
location int {
from 25317,
to 26144,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 7
}
}
},
{
id local id 8,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069725041,
location int {
from 26169,
to 26396,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 9
}
}
},
{
id local id 10,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069725051,
location int {
from 26447,
to 27115,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 11
}
}
},
{
id local id 12,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069725061,
location int {
from 27126,
to 27311,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 13
}
}
},
{
id local id 14,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069725071,
location int {
from 27318,
to 27683,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 15
}
}
},
{
id local id 16,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069725081,
location int {
from 27680,
to 27811,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 17
}
}
},
{
id local id 18,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069724991,
location int {
from 28198,
to 29448,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 19
}
}
},
{
id local id 20,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065069725001,
location int {
from 29473,
to 29589,
strand plus,
id gi 0670650650446861
},
xref {
{
id local id 21
}
}
}
}
}
}
}
}
}
}
}