高级检索

Riboviria isolate Culex/Museum13/2023/partiti-like_virus:segment:Seg1 RdRp (RdRp) gene, complete cds.

Accession:
C_AA111760.1

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Riboviria",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/Museum13/2023/partiti-like_virus:segment:Seg1"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: UNKNOWN"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Museum"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111760", version 1}, gi 0670650651117601
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1651,
            topology linear,
            strand ss,
            seq-data ncbi2na 'A390C5DAC0F23AFF0CE85E2175C83A3AEF1FBAB33818FAFE
88E6CEF862BCE6EFCD3237157DFF87CF808A3FCE03385B031BB502E3D88A2434CC03AF752DEC6E
343DBBCA2008C317F877EB9AEFE0DC204E1DD8C2D17A3C53A3106EACC2180A23B7F97B76095BD2
233F805EA16AFAC1A19A09B7C5231BB9BF388B12FA4020AC28023DB9EFEA9D17106B8D9E08A76F
DFDF5F33B409E091DE39173E6CDB9E03A416BA4ED3C3C38CEE50D1352A900CDC3878DCDE0FE108
9B165FA72C6239FD2CCB4E801FE1F6062F3E82E3AC0BFA86F0D77C8102219BF508E323C7D3431D
4BD873B0EB808CDB009A2BB17DE82CEE870CF3E31CFB8190F34B233ECDF411F4A0AF14FA78CECD
FA238D2FE4BEC86B3CD0DF8CB3747DE38280BF6B3ACF115E30BB3331E20D7D43B90F5FAF3FC164
3AFC5FA02A04EFDDBE6D8E37F5A26D6BC384338C6EFDD894FAD23BADC7793AE8427B08EBA04CBD
09CEF198FD0DE1CB0A3B6F9F33C08825E8DFF231F0239FACF84F4803683141C84EB8B137CA6F8D
75FA0B77D8DF10D4BC2EA336387C8DB6354B73E13A38BACE22FD0770E1E08F88E1700CE0E0E0'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  location int {
                    from 2,
                    to 1618,
                    strand plus,
                    id gi 0670650651117601
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RdRp"
                  },
                  location int {
                    from 2,
                    to 1618,
                    strand plus,
                    id gi 0670650651117601
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25450", version 1}, gi 067065065076254501
          },
          descr {
            title "MAG: RdRp [Riboviria]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 538,
            seq-data iupacaa "MQYLGKLDGFNMDLRPPRMDGVTCGYMNDWFGDAYVDEVMRVYHRSTP
SFDLLKEDFMKYDRKYVSKVIREEQSYKMVLQSVRDQFVLGEKIIPLTLGAVFESKNMTLDKSPGLPWIQRGYKTKGD
VFACLEARSEIFETWDRVGNGRGSVLPDTCAFMRVQLAKEGKEKIRAVWGSPTTVIAEEARFFLPYMSKLKHSDAPIA
YRAEMATGGMSLINDMCQSHPGAKYLMTDLSEFDKSVPPWLVRDAFSIVMENFDFERVIGSDGKVWDVNPLRTKRRVS
KMIDYFINTPVRLCNGERYRKSGGVPSGSMWTNIIDTIVNAIISRYCIFNTSGRLPLADMYLGDDQFAVVDGIINLDS
ISLLMKESFGMVLHPDKCIYTENPSNVQFLGYFNRNGLPWKGNMFLVASMIFPERPVNDNMIRVSRAIGQMWSTLHGG
QAVRWWNIVQAMLRDFNLTSKDVVAYIKEKPGSFRYLKMLGIDIQKIGIPTRHGEYILGVDPPWKSLRSYNPVKWDID
DLDRRSQSIDMDEWYESFNSND"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RdRp"
                    }
                  },
                  location int {
                    from 0,
                    to 537,
                    id gi 067065065076254501
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076254501,
              location int {
                from 2,
                to 1618,
                strand plus,
                id gi 0670650651117601
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}
资助信息
资助标题:Research on Discovery of Arthropod-borne Viral Pathogens and Infection Transmission Risk
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2023QNTJ-03
资助标题:Cross-border Vector-borne Disease Pathogen Surveillance and Port Application
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2022YFC2302700
序列分析