Tombusviridae isolate Culex/Museum14/2023/Tombus-like_virus Capsid protein (capsid) and RNA directed RNA polymerase (RdRp) genes, complete cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Tombusviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/Museum14/2023/Tombus-like_virus"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: UNKNOWN"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Museum"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111778", version 1}, gi 0670650651117781
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 3427,
            topology linear,
            strand ss,
            seq-data ncbi4na '482248811448124221421482288288211444428444221811
888284224882482424884888248848211848221882422884288881888224888228482482824822
184228411241288248284282428241848888284248284881488242484441821822148248184222
448884284218888411842212484841442842211811122284884422844488484882484882484414
821882248228441884482881884842221188244424484482842881448244421884148448141842
821884811814822822848441422FFFFFFFFFF22488114481242214214822882882114444284442
218118882842248824824248848882488482118482218824228842888818882248882284824828
248221842284112412882482842824282418488882842482848814882444844418218221482481
842224488842842188884118422124848414428422118111222848844228444884848824848824
844148218822482284418844828818848422211882444244844828428814482444218841484481
482121218881181482411114428221214414412818812118414218281221282118422241228114
214122122422241188444212118114122118221441244118412822124112124112121122214422
112144488818844214228212124844218821111842142111224442181241284418418222122241
128112141242141111218241424142141241148248821442184412414124121441112441118111
142114424118441218841211241112112424124112442141118818442221422228841141144128
428442481228811244121112124144211118228811211441281248122181228248211188114211
842481288242141448144121422841821218288124141111448218421141248418211411121828
241288214428211441212122188228212282124112141218218421214442182181218211842228
111F21144211124218812881222288284481288244214122811448241412118821441184482441
111241182444222281241882122114122481214281282214118818228412112818444884448242
848144184412242211181228818882224828281282111228412414844812812812221488142148
411121128422428422282144112144218288224411188288222414812412422421448182112111
282812141212182144488812242481218228141481844122218211414818488448142184214224
222148111141188842812211128422881412412818818141412441881181148124121881211221
882128111188414111184111112148111812111421224241281181214421241111221182882118
181184818441144818481111421884411212181284888111218218141288121818218888441111
441121112411118181421412111188818111884821214111844211844111122411441412212111
122882412421212481121481411212114111881888112211888881842428842882228214112481
111411182111112182442111141282282121421111842141121141821441414121844121484111
44112421121182144141148141212182118F142112121188182118181421181281114414881184
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411888848421112111881424882148821124441214218484281888111412188412141188812142
11188844118412111F484211481412812812141121818881184411848421218441118844111184
184111412121221188441211411882111241181812818812181288818288411411211288121441
214418211241214484211241211212184111881214812111818884411111411818211241181182
111411112111412421111411112122148121411881121488142184184414424818412414421881
4128811141118121218281112811821181411881141181818121F8112812228818184441828181
441288114812282421812112142182184128188821212412121114211821411241218111812122
41212111841428811121182118121122188128121821442188F141122111112112241212181818
144111181242141281121441288112841212442118441118441112222112441121121124421282
112124214421124411214412118281124411241184481288242814444212181122122114442181
121181884484124211121121121128482828818121218282241422211214FFF181421412111188
812111814821214111844211844111122411441412212111122882412421212481121481411212
11411188188811221888888180'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "capsid"
                  },
                  location int {
                    from 796,
                    to 1797,
                    strand plus,
                    id gi 0670650651117781
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Capsid protein"
                  },
                  location int {
                    from 796,
                    to 1797,
                    strand plus,
                    id gi 0670650651117781
                  },
                  xref {
                    {
                      data gene {
                        locus "capsid"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "RdRp"
                  },
                  location int {
                    from 1443,
                    to 3122,
                    strand plus,
                    id gi 0670650651117781
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "RNA directed RNA polymerase"
                  },
                  location int {
                    from 1443,
                    to 3122,
                    strand plus,
                    id gi 0670650651117781
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25472", version 1}, gi 067065065076254721
          },
          descr {
            title "MAG: Capsid protein [Tombusviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 333,
            seq-data iupacaa "MSIYHSMPDLSRPPPELGTIRPIQDGMTPRTRTQPRPTGFIGSLTRGI
QNAANRAYDWMIPPELTDAENIERADEVVQAWTRRQETEIKARRMDIDNETTRRTAEIMAQPLEEGLLAYLNGQTRGK
ILNKDYVPYLVKLSNAYFAEVGQPDHILREKVMQDVIKKHLDFRLKDTPFLTSRTDIMHRASYINALXQGKRITYPFW
YFGRPKVETIQEWSENESGPYDSPRPYSYSRIILTTMGWVAVGWTAKYLISRLYSNLTSGTTTQLAVKQLPLPSGTGI
FRKFFPSTTPQVSTNSTDTSGFTAYILEYGPIKSMLVACSRPVKEFATKLP"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Capsid protein"
                    }
                  },
                  location int {
                    from 0,
                    to 332,
                    id gi 067065065076254721
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25473", version 1}, gi 067065065076254731
          },
          descr {
            title "MAG: RNA directed RNA polymerase [Tombusviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 559,
            seq-data iupacaa "MVGKRIGPLRFTKTVQLLQNYPDNYGLGRCRMDRQIPYFPSLLKPDEW
YYYPVSSETTAAALRNRHLPEILPEYDAAGINKLYRHIRVYRVHPRVWTHQEYVGSMQPPSKRICYQTALDDYYRDGL
ISTTLQPFTKIEKMKNSKYKAPRLIQARKPIFNIMYGRYVKALEHILFKHHRLTYHFGKGTNENIADKIYKLSQKWQW
KTEGDHKTFDAHVTVEHKKLFNQFLCACFPQNVKEIKNIGKRLLTAKCRTRSGETWTVKGTQQSGEVDTSXSNTIINI
AILKELMFQLGIKGEVLANGDDFILFTNKPVDIDKSKAILKTMNMETEMHKSTRNIHTVEFCANKLAFSSTGQHVLFK
DIDRIYSKFGMTXVQVDYYRTYLMECAHGNWKMMKDTPIGQEFKRIYYYILYLEEQLTGQDQRQVQRQHMKLQYKYLE
KEYQRIIKENKDAKENTSTELTVSMMEAYDEALDLKKYTSKLINRIKNIYXNYPYMGSIGLKYLAYNSIMTISHDTKQ
SERHKYTDTNELKQSIQPLLHQAXRTKNNRHIYRKIRRLTGLN"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA directed RNA polymerase"
                    }
                  },
                  location int {
                    from 0,
                    to 558,
                    id gi 067065065076254731
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076254721,
              location int {
                from 796,
                to 1797,
                strand plus,
                id gi 0670650651117781
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076254731,
              location int {
                from 1443,
                to 3122,
                strand plus,
                id gi 0670650651117781
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}