高级检索

Viruses isolate Culex/Museum14/2023/Chaq_virus ORF1 (ORF1) and hypothetical protein no blastphit (ORF2) genes, complete cds.

Accession:
C_AA111779.1

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Viruses",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/Museum14/2023/Chaq_virus"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: UNKNOWN"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Museum"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111779", version 1}, gi 0670650651117791
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1287,
            topology linear,
            strand ss,
            seq-data ncbi2na 'CC4F77E182FF7FBD0CB81E13274D79CBFF5F87DCC6073648
5BA9F0BF1E43CC83B4D802D2082B2C49201B0C20340A50711542E0627061C6B6C2C765A95C15D7
86F1E7417EBA5CF1ACDE43DA014A61CC5F4305F3648FF7A44AFAC2AC117D0D7121E83D6302BD97
F48790B59F5202E92FE83786A4AF2FD7EBEDEA136288F0F13090768511620231DDAB7E8C8FBAE9
DB517D5A4368C41CD493445361BB7D6548D56F186AC4237C145D36DCB1A3D0D7B14CC08F8BA204
869F179951160EC2735D2DE261E3DA05DAD760D8C0BE59A7B620268808488A0101DED30216D3E1
AEFA719E706CB715EF9DB4F576FAE19C514F9B67BBD6BD9D274F658DF1AC8B9222A13823C1EC72
FD1F4F28A1F145EBBDC516175D5164454341E931F36D78E38C74CB8BECC214BD28DC7E34DC69F6
E5499D33426660CE2F8DBD44C7DB6275B7C9B8B11BAC7B7DF8'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "ORF1"
                  },
                  location int {
                    from 126,
                    to 1022,
                    strand plus,
                    id gi 0670650651117791
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "ORF1"
                  },
                  location int {
                    from 126,
                    to 1022,
                    strand plus,
                    id gi 0670650651117791
                  },
                  xref {
                    {
                      data gene {
                        locus "ORF1"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "ORF2"
                  },
                  location int {
                    from 1012,
                    to 1263,
                    strand plus,
                    id gi 0670650651117791
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "hypothetical protein no blastphit"
                  },
                  location int {
                    from 1012,
                    to 1263,
                    strand plus,
                    id gi 0670650651117791
                  },
                  xref {
                    {
                      data gene {
                        locus "ORF2"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25474", version 1}, gi 067065065076254741
          },
          descr {
            title "MAG: ORF1 [Viruses]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 298,
            seq-data iupacaa "MSSKSQKKVVQQKRNKKSKANYTPSERANDYGRKYSPGPNPPDVTAQP
WWPITVSAIRKPGDYTFNNLIADFLAQVGKGNTFNPTDWNSDKGSPFRLQVRFQKVAVWNLTGRLVSLVVWDIEEINY
ISNSDHTEKDTLGSWIDCGGSSTFPAIGYNYPASHHRRVFRPDPRYDGYKILTTSSSSTDSILYHIKIEWRTDGLPAP
TPNVSYPQSERLIRNLGPRIDKVAAAVEKAEKDREETNSVIKTVIDGVGYAANVVYPVARHSLVGDATTIASLCSGSL
SSFADLTVECREGHED"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "ORF1"
                    }
                  },
                  location int {
                    from 0,
                    to 297,
                    id gi 067065065076254741
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25475", version 1}, gi 067065065076254751
          },
          descr {
            title "MAG: hypothetical protein no blastphit [Viruses]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 83,
            seq-data iupacaa "MKINCTSFTSLGGLTTWCSTTDLLPPHTQSTGILIVLMMILIVSCIRP
VQDLLDHLRLRAQRSYQAREYELIVPHTSSSSVLA"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "hypothetical protein no blastphit"
                    }
                  },
                  location int {
                    from 0,
                    to 82,
                    id gi 067065065076254751
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076254741,
              location int {
                from 126,
                to 1022,
                strand plus,
                id gi 0670650651117791
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076254751,
              location int {
                from 1012,
                to 1263,
                strand plus,
                id gi 0670650651117791
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}
资助信息
资助标题:Research on Discovery of Arthropod-borne Viral Pathogens and Infection Transmission Risk
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2023QNTJ-03
资助标题:Cross-border Vector-borne Disease Pathogen Surveillance and Port Application
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2022YFC2302700
序列分析