高级检索

Orbivirus isolate Culex/Museum14/2023/Orbivirus:segment:4 hypothetical protein no blastphit (ORF1) and hypothetical protein no blastphit (ORF2) genes, complete cds.

Accession:
C_AA111790.1

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Orbivirus",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/Museum14/2023/Orbivirus:segment:4"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: UNKNOWN"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Museum"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111790", version 1}, gi 0670650651117901
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1552,
            topology linear,
            strand ss,
            seq-data ncbi2na 'D71FBA9C30B2134E0D8398A03F5BB67DAC592A658A704E05
34159C3D8B67FA7E7E02180F60F550D0A3A03BD7C538CEAE01F44CEA35FBCB35B1BA590E1FD5C6
72A241EB6FA0C9E31935068EDBFE315821B008DE082383B8FF09118F678279C7E6DF7A46380FDE
23E100ADF37CD97E6B6740A0E3E020E2835A82D6A10308FC839F6CF3B3FE08D60F3FF643D3CB8C
607139F08E22F5E383C9DDF86833583BC08F3DACDC5CE849FFBE90E7DDDF60C3C74CD88C2BFBAD
45CF63E3BFFBA7A20FD2BD923D139EF3BF23CFF79FCCE063E0C30C1E61D3BF6028CF8EDB48348D
B314C56CE7FA2D3D387D01158CCF2CF696248DFE8F389FAD04E3BA7288DE8725E9B0FA8130F337
7586FEE0AA80E33F3AD889985AE3CEE84C56E5D04FAACE2FCB50A1C4FF750028F009E4233A12A4
386A78F667BD088063F4CF841EF438E020E4C3E13FA7CF9C81AF50BFE207FE4C0E79E8F1C19EED
D3D4690FAF8B33D582348A86F8F3FE319FBD8CDFF68448363DBBB2A3FD223784BD4D160FDEC09C
87A12E28E7DDD1FE313CD0AF80'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "ORF1"
                  },
                  location int {
                    from 29,
                    to 1549,
                    strand plus,
                    id gi 0670650651117901
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "hypothetical protein no blastphit"
                  },
                  location int {
                    from 29,
                    to 1549,
                    strand plus,
                    id gi 0670650651117901
                  },
                  xref {
                    {
                      data gene {
                        locus "ORF1"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "ORF2"
                  },
                  location int {
                    from 691,
                    to 909,
                    strand minus,
                    id gi 0670650651117901
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "hypothetical protein no blastphit"
                  },
                  location int {
                    from 691,
                    to 909,
                    strand minus,
                    id gi 0670650651117901
                  },
                  xref {
                    {
                      data gene {
                        locus "ORF2"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25494", version 1}, gi 067065065076254941
          },
          descr {
            title "MAG: hypothetical protein no blastphit [Orbivirus]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 506,
            seq-data iupacaa "MNRMRGNFRVASVPQGAEANMNHQPANSSRFGLLERRNSNSPIKDGNV
PYHDMGETSHMGSLLVSVRGRNDFPYAREQLVVGIADTHPTDVVLIPEDVKDLKKMNVILSTRFAEAATCVFWHDEIS
EIDKRSYLIALRSLKGMIERMRNPGSPGQIRFRMLRIMYFEDPNYFSQFISDTNYMLKMRVPDELALLTEYPNVKDYS
VSTYGQLLLAMLLSSNNYSYRDKVCGPPIRLMFLWLENFRFADSHAVMFRLFSALYERLNNNNCDSCFERILMSSESD
RIPYPYALESFMTSNTRYISIRPSRSLDYELGQHDVARRSGLAWRNWEHNYISPTFVKGEMIFMVESATGDYVDIPVP
QHWGMSLVQGLHFLQKGLKAARYGQGNDGLIRAVQEKRFHIDNCSMMKECIIDIWLIARTVPSFENFCINAAGLLTLC
LIPRQLVEYIPEDQRDVDYFDTLVRYLFGHRIDSCVGIFRDLTVPSPNFCKARLDSEDASLTLIHYQG"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "hypothetical protein no blastphit"
                    }
                  },
                  location int {
                    from 0,
                    to 505,
                    id gi 067065065076254941
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25495", version 1}, gi 067065065076254951
          },
          descr {
            title "MAG: hypothetical protein no blastphit [Orbivirus]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 72,
            seq-data iupacaa "MNDSKAYGYGIRSDSDDINILSKHESQLLLFNRSYKAENNLNITACES
ANLKFSSHKNINRIGGPQTLSRYE"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "hypothetical protein no blastphit"
                    }
                  },
                  location int {
                    from 0,
                    to 71,
                    id gi 067065065076254951
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076254941,
              location int {
                from 29,
                to 1549,
                strand plus,
                id gi 0670650651117901
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076254951,
              location int {
                from 691,
                to 909,
                strand minus,
                id gi 0670650651117901
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}
资助信息
资助标题:Research on Discovery of Arthropod-borne Viral Pathogens and Infection Transmission Risk
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2023QNTJ-03
资助标题:Cross-border Vector-borne Disease Pathogen Surveillance and Port Application
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2022YFC2302700
序列分析