Partitiviridae isolate Culex/Masinga5M1/2023/partiti-like_virus-2:segment:1 RNA dependent RNA polymerase (RdRp) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/Masinga5M1/2023/partiti-like_virus-2:segment:1"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: UNKNOWN"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Masinga"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111826", version 1}, gi 0670650651118261
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1305,
            topology linear,
            strand ss,
            seq-data ncbi2na '406C5585755339109DEFE8882F771E76C8DA0F8AFCBF0D08
384EF823A8D435843CF6E3860FE8CECB1B925EA30BD2EE1D4B8150D45E06337F8CE8FE84F6C2D4
9568756E92512C40199A60BCE87B5239CA136358671E9164F0A4A2085E1178E3E42BBECD991335
222381608D624BB3A335879CD13E3A293BFE4757F8D862C420280865BE9F1A3184E9AFAE897101
D6776CD082CD8CFDA3B363FF527D8C212CDA64BE302324FF531D81206E84C618C50093ACC52190
B21EC5893A87172E0B3FDE88759D6BEEC1A602BA0820A7AEF50BA35CFD1527EF8F536F0FA3FE34
1CE4F5D088F6828E5208F97ADFE98E3DACBB5241251F767A288C2E941EDA09E9385B81BE30B537
1105E6D8E0BA2FDEA3F28C82BAFF57B6C57602BA0A29DEC53520E948628FA84EF652DA95CAB2F7
1A819A8B83A92FF548CE5B04FB28BDB9BF18C0DD5D88449D93BC68376900'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1183,
                    strand plus,
                    id gi 0670650651118261,
                    fuzz-from lim lt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1183,
                    strand plus,
                    id gi 0670650651118261,
                    fuzz-from lim lt
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25534", version 1}, gi 067065065076255341
          },
          descr {
            title "MAG: RNA dependent RNA polymerase, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-left
            }
          },
          inst {
            repr raw,
            mol aa,
            length 393,
            seq-data iupacaa "NVPRPSPYAQALFGEKFSTARRSELRFSLIKNDMLKMGSNPTIIRDDE
FGYVVRAAWDKFSVTPVNPIHLNDIFDMDLDIRKSSPGLPWQPQYKTRGEVMDCPDARTSIRRYWHRIKAGEDLTPDD
CKVLYRAHIQRDEPKIRAVYGYPTAITLMEACFALPLIDEYKKGKTPLAYGYDMAVGGAYKLRSRIKKYRYFGCIDFS
SFDKTVSAQLIKIAFSILEQNVDIRRYQKHGIPDASRLYRAWDYLVKYFLETPLRLCNGERWKKKAGVPSGSYFTQLV
DSIVNWILINYAFLKRFGRMPEDCLVFGDDSVVSSNSHFSLEEISGQLSEAGMTVNVDKSIYTTCVDEVEFLGFRIEG
GFPCRTLERWKEALYHPEWPDEDWDMFASRALG"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 392,
                    id gi 067065065076255341,
                    fuzz-from lim lt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame three,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076255341,
              location int {
                from 0,
                to 1183,
                strand plus,
                id gi 0670650651118261,
                fuzz-from lim lt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}