Viruses isolate Culex/Masinga5M2/2023/virus-2 Serine protease (serineprotease2) and RNA dependent RNA polymerase (RdRp) genes, complete cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Viruses",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/Masinga5M2/2023/virus-2"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: UNKNOWN"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Masinga"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111834", version 1}, gi 0670650651118341
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 2770,
            topology linear,
            strand ss,
            seq-data ncbi4na '148414111424888114848828181118812811182888842112
818481882141288244441184218444288412888211488142414244188288824241481282214248
448822212448488441482884824811828488248141441418248111122121488188482112412248
441448824422112211188412218144188442842142242842442481814842188442418844814411
488111414142811422422124881841411211422422811281288811441114882281222844882422
218418441842822111218822122144421148411188442418418144411141211848218824428818
144214844218124848844841481288428212822112221811828818441844821441218221818448
144144442211441842448821848111128441818441421848118141218142822141848882442118
811488812841442812884482421488444218142824242424888144284848282144411412212442
821484848414882848441218424118482118844112828411218841442241844284228844124828
488881821444182112418242844881814244182142281812212844211811448488444218421812
421844811441148844244844144281241418218481888481218411488411488142212224221184
441841424841841211881241881812141842821181842412218421481241441844844841441228
144211142818248124841142414844211181821428248811182141488418842411118841121184
224224841881248824144114F84442F41841414841428181241881841421424128442814144241
481214141141184842828422821881282244111248822882488882444441144221482822142821
244442141481844141448142122414422228424448882144842182824822188222448121421128
212114441142888481821242242884211212428282411411141488421142842228411881211144
14884418212442218211841481214222142241F124142211411424414844142822882842182211
881118414421424414241242111124188414422224118411428411181414424482128121484881
411418882818111128428184848114228482142822288844118828248214118882411211884281
18412128441211882882442422444881222881821124141142822112218144841F844881114182
488418441184222118181488211482414242281844818412484211881482184241442411812418
212181888144428882482111418411221218111424821111482111424448114844144884182181
42182482288422148821118448184424118428481288814221411241442888F118422148828142
121182221821111218448888484888842818448444844144141882282422184428111128111441
18812118282424841818282142884441248411242822844884448288F114484484448144881244
422144844828441488418418411844144244484212118184884812122412422818414418822244
188288882828118441884188488111214881882211444882184111824448282882118122182121
412112822184428184484424184212182281428848881141828112821188188442211188882422
1214424184124824842144114888481484184118188841424F8288414114281444848244484114
414884182118218181414888184441288828888141121441114228414222288818484422111212
184482118882184848114414448281411114414488881412142812848248118818428414824414
81888F418882844212444881424111148884442181211884222828248822818812248882844184
824148222284421214212488424421428141884184184841828142224418282844144842111814
8811818144248882422424828181881448842182822118888488448882181818421282'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "serineprotease2"
                  },
                  location int {
                    from 49,
                    to 1455,
                    strand plus,
                    id gi 0670650651118341
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Serine protease"
                  },
                  location int {
                    from 49,
                    to 1455,
                    strand plus,
                    id gi 0670650651118341
                  },
                  xref {
                    {
                      data gene {
                        locus "serineprotease2"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "RdRp"
                  },
                  location int {
                    from 1152,
                    to 2669,
                    strand plus,
                    id gi 0670650651118341
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  location int {
                    from 1152,
                    to 2669,
                    strand plus,
                    id gi 0670650651118341
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25543", version 1}, gi 067065065076255431
          },
          descr {
            title "MAG: Serine protease [Viruses]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 468,
            seq-data iupacaa "MYSDFGECMGLTFKLASGFFREYSSVVPTVLESCRNLFVEEIVKPQLL
STTVEVRPTKLTIGLAAAAAAYSALAIGRKLKRAKPPRYENKPPNYFKESSYPGSPMMDAPNIPPGQVKLAMIGKDNV
IRLIGSGIRVGEYLLTPTHNLMDGQDIHMVGGAKDAVHVKLDMEHVIDIAPDVSAIKFTEATWSQLGIARARLGCVSG
KTTAQCVSSVDMRMSIGTLNIEADGCLGRLFYQGSTIAGYSGSAYTTGNKVLGMHTHGKEVGGGGYEIMYLYMKLKLA
TRQWDERDDNYDYTDAQYATMQYEDGGEDLGKAIVREASGKYQLVKSELIAKIEQCRRDYVRGXWADESELYDYEQRL
ARGEYREECALPHYSGNVPSFSGEGQSPAHGAEYGEVAPRPLRVSGASRPFPVQQLTREALYHAACNTLSKKELQAAL
NYKGVGSRPSMSTAQPXRAKKRSGAPSASN"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Serine protease"
                    }
                  },
                  location int {
                    from 0,
                    to 467,
                    id gi 067065065076255431
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25544", version 1}, gi 067065065076255441
          },
          descr {
            title "MAG: RNA dependent RNA polymerase [Viruses]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 505,
            seq-data iupacaa "MCSASLLRKRSFVFGGRPVSSSRGRVWRGSTEAPAGFRCISSIPGTAT
HKGSFVSRRLQHALEERVASCPELQRSWITAINEYSPAXTSQEAEWSSFCIQLNEAAERRKTIEAPNEAEIEAVTTVL
EDFYKTAMCKPVSSLWNSRQNFEQLLMTLDNSSAPGYPYQREAPTIGXWLKIVDGMPNIVQVERLWYDVQLVMRGEYD
HIFRAFVKDEPHKASKVKAGKWRLIIASSLPVQMVWRMLYFSQNEAXNASSSTIPSKHGFVFCYGGWRRFLAMAKTKG
ITISRDISAWDVNAPGWVXKVVGRLRARWSGVDDEWRRVHNMLYTDAYEDSRILFSNGLIVKQLFQGFMKSGLFNTIT
DNSMAMVAMHILACLRSNSIIGQIFATGDDVVQEVCSDEYLSXLEKLGCRVKELINHIEFMGLSFRTGKPEPLYVAKH
MVNFMCKEGLEKEVLDSYCRNYAESEYXDFWHGLAKSLGIQLPSRSYYRFWMSSPLAQHVAAARLMM"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  location int {
                    from 0,
                    to 504,
                    id gi 067065065076255441
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076255431,
              location int {
                from 49,
                to 1455,
                strand plus,
                id gi 0670650651118341
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076255441,
              location int {
                from 1152,
                to 2669,
                strand plus,
                id gi 0670650651118341
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}